KEGG   PATHWAY: seur00630
Entry
seur00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella eurypsychrophilus
Class
Metabolism; Carbohydrate metabolism
Pathway map
seur00630  Glyoxylate and dicarboxylate metabolism
seur00630

Module
seur_M00012  Glyoxylate cycle [PATH:seur00630]
seur_M00621  Glycine cleavage system [PATH:seur00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella eurypsychrophilus [GN:seur]
Gene
FM038_012790  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
FM038_014030  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FM038_011485  malate synthase G [KO:K01638] [EC:2.3.3.9]
FM038_012780  malate synthase G [KO:K01638] [EC:2.3.3.9]
FM038_016250  malate synthase [KO:K01638] [EC:2.3.3.9]
FM038_004780  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FM038_009160  citrate synthase [KO:K01647] [EC:2.3.3.1]
FM038_007005  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
FM038_001995  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FM038_006915  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FM038_001420  catalase [KO:K03781] [EC:1.11.1.6]
FM038_003705  katB; catalase KatB [KO:K03781] [EC:1.11.1.6]
FM038_004880  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
FM038_010100  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
FM038_023310  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FM038_002330  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FM038_011540  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FM038_005325  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
FM038_010480  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FM038_023770  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FM038_017990  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FM038_019860  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FM038_019870  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FM038_001965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FM038_019865  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FM038_010165  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FM038_007380  glycerate kinase [KO:K00865] [EC:2.7.1.165]
FM038_011270  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FM038_024595  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FM038_024620  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FM038_021830  fdxH; formate dehydrogenase subunit beta [KO:K00124]
FM038_024590  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
FM038_024615  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
FM038_021835  formate dehydrogenase subunit gamma [KO:K00127]
FM038_023120  formate dehydrogenase subunit gamma [KO:K00127]
FM038_024585  formate dehydrogenase subunit gamma [KO:K00127]
FM038_024610  formate dehydrogenase subunit gamma [KO:K00127]
FM038_016900  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
seur00010  Glycolysis / Gluconeogenesis
seur00020  Citrate cycle (TCA cycle)
seur00030  Pentose phosphate pathway
seur00053  Ascorbate and aldarate metabolism
seur00071  Fatty acid degradation
seur00230  Purine metabolism
seur00250  Alanine, aspartate and glutamate metabolism
seur00260  Glycine, serine and threonine metabolism
seur00620  Pyruvate metabolism
seur00710  Carbon fixation by Calvin cycle
seur00750  Vitamin B6 metabolism
seur00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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