KEGG   PATHWAY: sff00020
Entry
sff00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mammaliicoccus fleurettii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sff00020  Citrate cycle (TCA cycle)
sff00020

Module
sff_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sff00020]
sff_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sff00020]
sff_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sff00020]
sff_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sff00020]
sff_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sff00020]
Other DBs
GO: 0006099
Organism
Mammaliicoccus fleurettii [GN:sff]
Gene
FOB90_02395  citrate synthase [KO:K01647] [EC:2.3.3.1]
FOB90_00560  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FOB90_02390  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOB90_01110  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FOB90_01105  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FOB90_11250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB90_01530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB90_00215  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FOB90_00220  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FOB90_11955  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FOB90_11950  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FOB90_11470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FOB90_11475  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FOB90_11465  succinate dehydrogenase [KO:K00241]
FOB90_03185  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FOB90_09680  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FOB90_05385  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FOB90_06590  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FOB90_11345  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FOB90_02855  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FOB90_11235  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FOB90_11240  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FOB90_11245  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sff00010  Glycolysis / Gluconeogenesis
sff00053  Ascorbate and aldarate metabolism
sff00061  Fatty acid biosynthesis
sff00062  Fatty acid elongation
sff00071  Fatty acid degradation
sff00190  Oxidative phosphorylation
sff00220  Arginine biosynthesis
sff00250  Alanine, aspartate and glutamate metabolism
sff00280  Valine, leucine and isoleucine degradation
sff00350  Tyrosine metabolism
sff00470  D-Amino acid metabolism
sff00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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