KEGG   PATHWAY: sfy00020
Entry
sfy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces fagopyri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfy00020  Citrate cycle (TCA cycle)
sfy00020

Module
sfy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfy00020]
sfy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfy00020]
sfy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfy00020]
sfy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfy00020]
sfy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfy00020]
Other DBs
GO: 0006099
Organism
Streptomyces fagopyri [GN:sfy]
Gene
GFH48_03140  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
GFH48_11645  citrate synthase [KO:K01647] [EC:2.3.3.1]
GFH48_11650  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
GFH48_22875  citrate synthase [KO:K01647] [EC:2.3.3.1]
GFH48_25935  citrate synthase [KO:K01647] [EC:2.3.3.1]
GFH48_11265  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GFH48_07740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GFH48_14630  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GFH48_05975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFH48_29050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFH48_17775  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GFH48_17780  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GFH48_09185  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GFH48_16920  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GFH48_09190  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GFH48_16925  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GFH48_07395  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFH48_15570  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFH48_16660  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFH48_35775  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
GFH48_07390  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GFH48_15575  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GFH48_16665  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GFH48_07400  succinate dehydrogenase [KO:K00241]
GFH48_16650  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GFH48_16655  succinate dehydrogenase [KO:K00242]
GFH48_15690  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GFH48_07090  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GFH48_15705  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
GFH48_16865  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GFH48_35510  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GFH48_15995  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GFH48_27770  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GFH48_29035  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GFH48_38645  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GFH48_29045  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfy00010  Glycolysis / Gluconeogenesis
sfy00053  Ascorbate and aldarate metabolism
sfy00061  Fatty acid biosynthesis
sfy00071  Fatty acid degradation
sfy00190  Oxidative phosphorylation
sfy00220  Arginine biosynthesis
sfy00250  Alanine, aspartate and glutamate metabolism
sfy00280  Valine, leucine and isoleucine degradation
sfy00350  Tyrosine metabolism
sfy00470  D-Amino acid metabolism
sfy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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