KEGG   PATHWAY: sgn00020
Entry
sgn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Saprospira grandis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgn00020  Citrate cycle (TCA cycle)
sgn00020

Module
sgn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgn00020]
sgn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgn00020]
sgn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgn00020]
sgn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgn00020]
sgn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgn00020]
Other DBs
GO: 0006099
Organism
Saprospira grandis [GN:sgn]
Gene
SGRA_2463  gltA; type I citrate synthase [KO:K01647] [EC:2.3.3.1]
SGRA_3666  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SGRA_2772  icd; isocitrate dehydrogenase (nadp) [KO:K00031] [EC:1.1.1.42]
SGRA_0715  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SGRA_1865  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SGRA_2666  sucB; 2-oxoglutarate dehydrogenase, e2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SGRA_3699  sucB; catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
SGRA_0741  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SGRA_4094  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SGRA_2007  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SGRA_3687  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SGRA_2255  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SGRA_2256  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SGRA_2254  sdhC; succinate dehydrogenase subunit c [KO:K00241]
SGRA_1618  fumC; fumarate hydratase, class ii [KO:K01679] [EC:4.2.1.2]
SGRA_0963  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SGRA_0552  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SGRA_1304  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SGRA_2542  pdhB; transketolase central region [KO:K00162] [EC:1.2.4.1]
SGRA_3078  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgn00010  Glycolysis / Gluconeogenesis
sgn00053  Ascorbate and aldarate metabolism
sgn00061  Fatty acid biosynthesis
sgn00071  Fatty acid degradation
sgn00190  Oxidative phosphorylation
sgn00220  Arginine biosynthesis
sgn00250  Alanine, aspartate and glutamate metabolism
sgn00280  Valine, leucine and isoleucine degradation
sgn00350  Tyrosine metabolism
sgn00470  D-Amino acid metabolism
sgn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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