KEGG   PATHWAY: sha00020
Entry
sha00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus haemolyticus JCSC1435
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sha00020  Citrate cycle (TCA cycle)
sha00020

Module
sha_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sha00020]
sha_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sha00020]
sha_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sha00020]
sha_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sha00020]
sha_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sha00020]
Other DBs
GO: 0006099
Organism
Staphylococcus haemolyticus JCSC1435 [GN:sha]
Gene
SH1230  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
SH1558  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SH1231  citC; isocitrate dehyrogenase [KO:K00031] [EC:1.1.1.42]
SH1492  odhA; 2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
SH1493  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SH1856  pdhD; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 [KO:K00382] [EC:1.8.1.4]
SH1397  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SH0223  unnamed protein product; hypothetical protein, similar to dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SH0227  unnamed protein product; hypothetical protein, similar to dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SH1624  unnamed protein product; hypothetical protein, similar to 2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SH1623  unnamed protein product; hypothetical protein, similar to 2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SH1667  sucD; succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
SH1668  sucC; succinyl-CoA synthetase (beta subunit) [KO:K01903] [EC:6.2.1.5]
SH1813  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SH1812  sdhB; succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
SH1814  sdhC; succinate dehydrogenase cytochrome b-558 [KO:K00241]
SH1111  citG; fumarate hydratase, class-II [KO:K01679] [EC:4.2.1.2]
SH0693  unnamed protein product; hypothetical protein, similar to malate-quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SH0443  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SH1838  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SH1137  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SH1859  pyrubate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SH1858  phdB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SH0226  unnamed protein product; hypothetical protein, similar to dihydrolipoamide acetyltransferase, E2 component [KO:K00627] [EC:2.3.1.12]
SH1857  pdhC; dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sha00010  Glycolysis / Gluconeogenesis
sha00053  Ascorbate and aldarate metabolism
sha00061  Fatty acid biosynthesis
sha00071  Fatty acid degradation
sha00190  Oxidative phosphorylation
sha00220  Arginine biosynthesis
sha00250  Alanine, aspartate and glutamate metabolism
sha00280  Valine, leucine and isoleucine degradation
sha00350  Tyrosine metabolism
sha00470  D-Amino acid metabolism
sha00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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