KEGG   PATHWAY: shal00020
Entry
shal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurospirillum halorespirans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shal00020  Citrate cycle (TCA cycle)
shal00020

Module
shal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shal00020]
shal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shal00020]
shal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shal00020]
Other DBs
GO: 0006099
Organism
Sulfurospirillum halorespirans [GN:shal]
Gene
SHALO_2931  citrate synthase [KO:K01647] [EC:2.3.3.1]
SHALO_1940  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SHALO_1559  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SHALO_1419  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SHALO_1424  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SHALO_1425  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SHALO_1426  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
SHALO_1423  2-oxoglutarate oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
SHALO_1422  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
SHALO_1421  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
SHALO_0899  periplasmic flavoprotein, small FeS cluster subunit [KO:K00240] [EC:1.3.5.1]
SHALO_2694  periplasmic methylmenaquinol:fumarate reductase, FeS cluster subunit MfrB [KO:K00240] [EC:1.3.5.1]
SHALO_1316  hypothetical protein [KO:K00241]
SHALO_0900  heterodisulfide reductase subunit B-like protein [KO:K00241]
SHALO_2693  periplasmic methylmenaquinol:fumarate reductase, membrane subunit MfrE [KO:K00241]
SHALO_0543  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
SHALO_0544  fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
SHALO_0542  fumarate reductase cytochrome b subunit [KO:K25996]
SHALO_1635  fumarate hydratase class I / tartrate dehydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
SHALO_1634  fumarate hydratase / tartrate dehydratase class I, beta subunit [KO:K01678] [EC:4.2.1.2]
SHALO_1430  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SHALO_1420  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SHALO_0662  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SHALO_2302  2-oxoglutarate carboxylase [KO:K01959] [EC:6.4.1.1]
SHALO_0793  putative oxaloacetate decarboxylase alpha chain [KO:K01960] [EC:6.4.1.1]
SHALO_0795  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SHALO_2324  pyruvate-ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shal00010  Glycolysis / Gluconeogenesis
shal00053  Ascorbate and aldarate metabolism
shal00061  Fatty acid biosynthesis
shal00071  Fatty acid degradation
shal00190  Oxidative phosphorylation
shal00220  Arginine biosynthesis
shal00250  Alanine, aspartate and glutamate metabolism
shal00280  Valine, leucine and isoleucine degradation
shal00350  Tyrosine metabolism
shal00470  D-Amino acid metabolism
shal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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