KEGG   PATHWAY: shis00020
Entry
shis00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salvia hispanica (chia)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shis00020  Citrate cycle (TCA cycle)
shis00020

Module
shis_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shis00020]
shis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shis00020]
shis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shis00020]
Other DBs
GO: 0006099
Organism
Salvia hispanica (chia) [GN:shis]
Gene
125194484  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125195776  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125196486  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
125201655  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
125207979  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
125208316  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
125196308  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
125223117  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
125186669  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125193735  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
125203286  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
125196067  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
125199570  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
125214031  isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
125187566  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125219710  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
125212667  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
125201564  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
125215383  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
125197102  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
125213122  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
125222013  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
125205331  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125222745  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125185625  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125204816  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125205348  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125205643  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125193974  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125214654  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
125188728  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125202179  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125202298  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125203450  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125214016  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
125223298  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
125208398  uncharacterized protein LOC125208398 [KO:K00235] [EC:1.3.5.1]
125214198  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
125214232  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
125196762  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
125222207  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
125187721  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
125196231  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
125197520  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
125219533  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
125191911  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
125208839  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125210184  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125212835  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125200973  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125213179  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
125219990  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
125200807  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
125222233  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
125188973  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
125207555  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125197323  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
125223244  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125188922  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
125208933  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
125196267  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
125201882  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
125202643  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
125214716  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
125187557  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125188610  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125207387  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125207475  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125209137  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125209888  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125213679  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
125223156  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shis00010  Glycolysis / Gluconeogenesis
shis00053  Ascorbate and aldarate metabolism
shis00061  Fatty acid biosynthesis
shis00062  Fatty acid elongation
shis00071  Fatty acid degradation
shis00190  Oxidative phosphorylation
shis00220  Arginine biosynthesis
shis00250  Alanine, aspartate and glutamate metabolism
shis00280  Valine, leucine and isoleucine degradation
shis00350  Tyrosine metabolism
shis00470  D-Amino acid metabolism
shis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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