KEGG   PATHWAY: sita00020
Entry
sita00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Setaria italica (foxtail millet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sita00020  Citrate cycle (TCA cycle)
sita00020

Module
sita_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sita00020]
sita_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sita00020]
sita_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sita00020]
sita_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sita00020]
sita_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sita00020]
Other DBs
GO: 0006099
Organism
Setaria italica (foxtail millet) [GN:sita]
Gene
101786364  citrate synthase 4, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
101771119  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
101758485  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
101766243  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
101784412  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
101753164  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
101758928  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
101783737  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
101772045  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
101764125  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
101771779  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
101780948  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
101754268  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101761972  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
101773722  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
101786489  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
101780606  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
101760312  dihydrolipoyl dehydrogenase, mitochondrial isoform X2 [KO:K00382] [EC:1.8.1.4]
101769227  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
101756978  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
101763461  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
101759813  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101772328  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101772737  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
101755114  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
101774368  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X2 [KO:K00235] [EC:1.3.5.1]
101773865  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
101764948  succinate dehydrogenase subunit 3-1, mitochondrial [KO:K00236]
101753776  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
101784576  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
101760275  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101765343  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101779301  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101760979  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101772404  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101771167  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101761852  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101771269  malate dehydrogenase, chloroplastic isoform X2 [KO:K00026] [EC:1.1.1.37]
101775144  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101783767  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
101763108  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
105913776  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
101777006  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
101771458  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic isoform X1 [KO:K00162] [EC:1.2.4.1]
101777642  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
101771006  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
101783096  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
101768289  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
101763713  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
101765337  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
101771199  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
101769555  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sita00010  Glycolysis / Gluconeogenesis
sita00053  Ascorbate and aldarate metabolism
sita00061  Fatty acid biosynthesis
sita00062  Fatty acid elongation
sita00071  Fatty acid degradation
sita00190  Oxidative phosphorylation
sita00220  Arginine biosynthesis
sita00250  Alanine, aspartate and glutamate metabolism
sita00280  Valine, leucine and isoleucine degradation
sita00350  Tyrosine metabolism
sita00470  D-Amino acid metabolism
sita00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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