KEGG   PATHWAY: siv00020
Entry
siv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Solibacillus silvestris StLB046
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
siv00020  Citrate cycle (TCA cycle)
siv00020

Module
siv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:siv00020]
siv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:siv00020]
siv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:siv00020]
siv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:siv00020]
siv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:siv00020]
Other DBs
GO: 0006099
Organism
Solibacillus silvestris StLB046 [GN:siv]
Gene
SSIL_1185  citrate synthase [KO:K01647] [EC:2.3.3.1]
SSIL_2222  aconitase A [KO:K01681] [EC:4.2.1.3]
SSIL_1186  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SSIL_2106  2-oxoglutarate dehydrogenase complex, dehydrogenase component [KO:K00164] [EC:1.2.4.2]
SSIL_2107  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
SSIL_2691  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
SSIL_1714  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
SSIL_3151  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
SSIL_2911  korA; pyruvate:ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SSIL_2910  korB; pyruvate:ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SSIL_3009  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SSIL_3010  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
SSIL_0398  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
SSIL_2196  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
SSIL_1261  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SSIL_1262  sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
SSIL_1260  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
SSIL_0632  tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [KO:K01676] [EC:4.2.1.2]
SSIL_3647  fumarase [KO:K01679] [EC:4.2.1.2]
SSIL_1187  malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SSIL_0165  predicted dehydrogenase [KO:K00116] [EC:1.1.5.4]
SSIL_3134  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SSIL_1106  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SSIL_3154  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component, eukaryotic type, alpha subunit [KO:K00161] [EC:1.2.4.1]
SSIL_3153  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component, eukaryotic type, beta subunit [KO:K00162] [EC:1.2.4.1]
SSIL_3152  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
siv00010  Glycolysis / Gluconeogenesis
siv00053  Ascorbate and aldarate metabolism
siv00061  Fatty acid biosynthesis
siv00062  Fatty acid elongation
siv00071  Fatty acid degradation
siv00190  Oxidative phosphorylation
siv00220  Arginine biosynthesis
siv00250  Alanine, aspartate and glutamate metabolism
siv00280  Valine, leucine and isoleucine degradation
siv00350  Tyrosine metabolism
siv00470  D-Amino acid metabolism
siv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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