KEGG   PATHWAY: sja00630
Entry
sja00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella japonica
Class
Metabolism; Carbohydrate metabolism
Pathway map
sja00630  Glyoxylate and dicarboxylate metabolism
sja00630

Module
sja_M00012  Glyoxylate cycle [PATH:sja00630]
sja_M00621  Glycine cleavage system [PATH:sja00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella japonica [GN:sja]
Gene
SJ2017_3047  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SJ2017_1674  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
SJ2017_3048  Malate synthase A [KO:K01638] [EC:2.3.3.9]
SJ2017_0779  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SJ2017_2437  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SJ2017_0420  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SJ2017_1481  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SJ2017_0736  Catalase [KO:K03781] [EC:1.11.1.6]
SJ2017_3838  Catalase [KO:K03781] [EC:1.11.1.6]
SJ2017_1113  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
SJ2017_3934  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SJ2017_1745  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
SJ2017_3809  Serine--pyruvate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
SJ2017_0254  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SJ2017_3124  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SJ2017_0799  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
SJ2017_0797  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
SJ2017_0416  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SJ2017_0798  glycine cleavage system protein H [KO:K02437]
SJ2017_1534  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
SJ2017_2086  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
SJ2017_1904  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SJ2017_1970  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SJ2017_4068  formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
SJ2017_4072  formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
SJ2017_3511  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
SJ2017_4067  formate dehydrogenase iron-sulfur subunit [KO:K00124]
SJ2017_4071  Formate dehydrogenase iron-sulfur subunit [KO:K00124]
SJ2017_4066  formate dehydrogenase subunit gamma [KO:K00127]
SJ2017_4070  formate dehydrogenase subunit gamma [KO:K00127]
SJ2017_1397  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sja00010  Glycolysis / Gluconeogenesis
sja00020  Citrate cycle (TCA cycle)
sja00030  Pentose phosphate pathway
sja00053  Ascorbate and aldarate metabolism
sja00071  Fatty acid degradation
sja00230  Purine metabolism
sja00250  Alanine, aspartate and glutamate metabolism
sja00260  Glycine, serine and threonine metabolism
sja00620  Pyruvate metabolism
sja00710  Carbon fixation by Calvin cycle
sja00750  Vitamin B6 metabolism
sja00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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