KEGG   PATHWAY: skg03030
Entry
skg03030                    Pathway                                
Name
DNA replication - Streptomyces koelreuteriae
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
skg03030  DNA replication
skg03030

Organism
Streptomyces koelreuteriae [GN:skg]
Gene
KJK29_30085  DEDDh family exonuclease [KO:K02342] [EC:2.7.7.7]
KJK29_06970  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
KJK29_31720  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
KJK29_28600  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KJK29_19610  DNA polymerase III subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
KJK29_16395  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
KJK29_25605  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KJK29_12885  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KJK29_18710  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KJK29_18875  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
KJK29_26255  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
KJK29_18855  single-stranded DNA-binding protein [KO:K03111]
KJK29_24770  single-stranded DNA-binding protein [KO:K03111]
KJK29_37685  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
KJK29_27230  bifunctional RNase H/acid phosphatase [KO:K22316] [EC:3.1.26.4 3.1.3.73]
KJK29_08640  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
KJK29_28980  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
KJK29_10200  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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