KEGG   PATHWAY: skh00010
Entry
skh00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Shewanella khirikhana
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
skh00010  Glycolysis / Gluconeogenesis
skh00010

Module
skh_M00002  Glycolysis, core module involving three-carbon compounds [PATH:skh00010]
skh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:skh00010]
skh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:skh00010]
Other DBs
GO: 0006096 0006094
Organism
Shewanella khirikhana [GN:skh]
Gene
STH12_03668  nagK_2; N-acetyl-D-glucosamine kinase [KO:K25026] [EC:2.7.1.2]
STH12_00440  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
STH12_00131  fbp_1; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
STH12_02632  fda; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
STH12_00489  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
STH12_01488  gap_1; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
STH12_01490  gap_2; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
STH12_02633  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
STH12_03715  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
STH12_00575  eno; Enolase [KO:K01689] [EC:4.2.1.11]
STH12_01496  pykA; Pyruvate kinase II [KO:K00873] [EC:2.7.1.40]
STH12_01796  ppsA; Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
STH12_04073  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
STH12_04074  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
STH12_04075  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STH12_03650  frmA; S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
STH12_01370  adhE; Aldehyde-alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
STH12_02236  adhB; Alcohol dehydrogenase 2 [KO:K13954] [EC:1.1.1.1]
STH12_03373  aldB; Aldehyde dehydrogenase B [KO:K00138] [EC:1.2.1.-]
STH12_01805  acs; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
STH12_00072  galM; Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
STH12_01383  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
STH12_01850  yeaD; Putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
STH12_03851  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
STH12_01324  crr; Glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
STH12_00688  ptsG; PTS system glucose-specific EIICB component [KO:K02779] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
skh00020  Citrate cycle (TCA cycle)
skh00030  Pentose phosphate pathway
skh00500  Starch and sucrose metabolism
skh00620  Pyruvate metabolism
skh00640  Propanoate metabolism
skh00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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