KEGG   PATHWAY: slal00020
Entry
slal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Seriola lalandi dorsalis (Yellowtail amberjack)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slal00020  Citrate cycle (TCA cycle)
slal00020

Module
slal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slal00020]
slal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slal00020]
slal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slal00020]
slal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slal00020]
slal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slal00020]
Other DBs
GO: 0006099
Organism
Seriola lalandi dorsalis (Yellowtail amberjack) [GN:slal]
Gene
111661863  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111652814  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
111657113  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
111646118  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111667953  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111647573  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111659558  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
111666908  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
111659144  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
111644168  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111650732  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
111670824  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111664213  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111670958  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111666976  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111647406  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
111654687  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
111659486  ogdh; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
111653039  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111663198  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111650494  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111664065  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111659540  sucla2; LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111670962  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111658076  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111650006  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111660804  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
111668371  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
111671358  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
111654281  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111663938  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111669497  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
111662020  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111658337  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111658021  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111653464  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
111648212  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
111652122  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
111666255  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111647281  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
111668207  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
111666178  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slal00010  Glycolysis / Gluconeogenesis
slal00053  Ascorbate and aldarate metabolism
slal00061  Fatty acid biosynthesis
slal00062  Fatty acid elongation
slal00071  Fatty acid degradation
slal00190  Oxidative phosphorylation
slal00220  Arginine biosynthesis
slal00250  Alanine, aspartate and glutamate metabolism
slal00280  Valine, leucine and isoleucine degradation
slal00350  Tyrosine metabolism
slal00470  D-Amino acid metabolism
slal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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