KEGG   PATHWAY: slan00630
Entry
slan00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sphingomonas lacunae
Class
Metabolism; Carbohydrate metabolism
Pathway map
slan00630  Glyoxylate and dicarboxylate metabolism
slan00630

Module
slan_M00012  Glyoxylate cycle [PATH:slan00630]
slan_M00621  Glycine cleavage system [PATH:slan00630]
slan_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:slan00630]
Other DBs
GO: 0046487 0043648
Organism
Sphingomonas lacunae [GN:slan]
Gene
GV829_00390  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
GV829_08905  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GV829_09750  malate synthase G [KO:K01638] [EC:2.3.3.9]
GV829_01300  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GV829_10495  citrate synthase [KO:K01647] [EC:2.3.3.1]
GV829_03725  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GV829_07975  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_11770  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_01920  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_02825  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_03030  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_03055  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_03220  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_03900  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GV829_05870  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
GV829_12120  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
GV829_01820  hypothetical protein [KO:K05606] [EC:5.1.99.1]
GV829_02840  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
GV829_09535  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
GV829_12145  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
GV829_12110  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
GV829_12130  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GV829_05960  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
GV829_03235  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
GV829_08600  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
GV829_13775  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GV829_04730  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GV829_09820  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
GV829_13305  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
GV829_13300  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
GV829_13315  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GV829_12205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GV829_01280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GV829_13310  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GV829_02770  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GV829_06265  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
GV829_01405  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
slan00010  Glycolysis / Gluconeogenesis
slan00020  Citrate cycle (TCA cycle)
slan00030  Pentose phosphate pathway
slan00053  Ascorbate and aldarate metabolism
slan00071  Fatty acid degradation
slan00230  Purine metabolism
slan00250  Alanine, aspartate and glutamate metabolism
slan00260  Glycine, serine and threonine metabolism
slan00620  Pyruvate metabolism
slan00710  Carbon fixation by Calvin cycle
slan00750  Vitamin B6 metabolism
slan00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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