KEGG   PATHWAY: sliu00020
Entry
sliu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Spodoptera litura (tobacco cutworm)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sliu00020  Citrate cycle (TCA cycle)
sliu00020

Module
sliu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sliu00020]
sliu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sliu00020]
sliu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sliu00020]
sliu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sliu00020]
sliu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sliu00020]
Other DBs
GO: 0006099
Organism
Spodoptera litura (tobacco cutworm) [GN:sliu]
Gene
111360629  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
111351504  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
111359154  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111359296  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
111351550  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
111353386  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
111357097  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111354741  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111354947  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111349733  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
111352114  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111350443  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
111351290  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111349213  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
111348703  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111352318  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111353246  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111360567  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
111353734  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111363847  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
111357155  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111354437  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
111357468  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
111360993  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
111350483  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
111356489  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111356570  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
111348413  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111356200  uncharacterized protein LOC111356200 [KO:K00025] [EC:1.1.1.37]
111347848  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111348487  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111358311  uncharacterized protein LOC111358311 [KO:K00026] [EC:1.1.1.37]
111358396  uncharacterized protein LOC111358396 [KO:K00026] [EC:1.1.1.37]
111359992  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111353739  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
111362068  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
111350817  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
111354384  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
111356157  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
111353812  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sliu00010  Glycolysis / Gluconeogenesis
sliu00053  Ascorbate and aldarate metabolism
sliu00061  Fatty acid biosynthesis
sliu00062  Fatty acid elongation
sliu00071  Fatty acid degradation
sliu00190  Oxidative phosphorylation
sliu00220  Arginine biosynthesis
sliu00250  Alanine, aspartate and glutamate metabolism
sliu00280  Valine, leucine and isoleucine degradation
sliu00350  Tyrosine metabolism
sliu00470  D-Amino acid metabolism
sliu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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