KEGG   PATHWAY: slms00020
Entry
slms00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salipaludibacillus sp. LMS25
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slms00020  Citrate cycle (TCA cycle)
slms00020

Module
slms_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slms00020]
slms_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slms00020]
slms_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slms00020]
slms_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slms00020]
slms_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slms00020]
Other DBs
GO: 0006099
Organism
Salipaludibacillus sp. LMS25 [GN:slms]
Gene
MM221_03040  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
MM221_04050  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
MM221_20900  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MM221_03035  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MM221_19575  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MM221_19580  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MM221_01185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM221_10225  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM221_18415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM221_00015  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MM221_00010  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MM221_00470  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MM221_00475  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MM221_02790  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MM221_02785  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MM221_11580  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MM221_02795  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
MM221_11585  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
MM221_11565  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
MM221_11570  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
MM221_10710  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
MM221_19520  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MM221_03030  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MM221_03560  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MM221_01200  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MM221_01195  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MM221_01190  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
MM221_20765  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
MM221_20760  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slms00010  Glycolysis / Gluconeogenesis
slms00053  Ascorbate and aldarate metabolism
slms00061  Fatty acid biosynthesis
slms00071  Fatty acid degradation
slms00190  Oxidative phosphorylation
slms00220  Arginine biosynthesis
slms00250  Alanine, aspartate and glutamate metabolism
slms00280  Valine, leucine and isoleucine degradation
slms00350  Tyrosine metabolism
slms00470  D-Amino acid metabolism
slms00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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