KEGG   PATHWAY: sluc00020
Entry
sluc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sander lucioperca (pikeperch)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sluc00020  Citrate cycle (TCA cycle)
sluc00020

Module
sluc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sluc00020]
sluc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sluc00020]
sluc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sluc00020]
sluc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sluc00020]
sluc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sluc00020]
Other DBs
GO: 0006099
Organism
Sander lucioperca (pikeperch) [GN:sluc]
Gene
116043513  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
116059528  aclya; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
116060998  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
116060911  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
116048741  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
116065200  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
116050683  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
116060461  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
116038731  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
116059373  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
116036668  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
116038439  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
116039181  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
116034874  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
116041777  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
116054464  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
116056665  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
116066177  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
116035574  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
116036328  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
116034245  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116067591  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116035133  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116035313  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
116041607  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
116040982  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
116040568  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
116038920  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
116055297  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
116061686  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
116052168  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
116035224  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
116039901  pcxb; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
116051114  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
116046283  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
116040025  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b isoform X1 [KO:K00161] [EC:1.2.4.1]
116064782  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
116047792  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
116064946  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sluc00010  Glycolysis / Gluconeogenesis
sluc00053  Ascorbate and aldarate metabolism
sluc00061  Fatty acid biosynthesis
sluc00062  Fatty acid elongation
sluc00071  Fatty acid degradation
sluc00190  Oxidative phosphorylation
sluc00220  Arginine biosynthesis
sluc00250  Alanine, aspartate and glutamate metabolism
sluc00280  Valine, leucine and isoleucine degradation
sluc00350  Tyrosine metabolism
sluc00470  D-Amino acid metabolism
sluc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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