KEGG   PATHWAY: slv00020
Entry
slv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces lividans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slv00020  Citrate cycle (TCA cycle)
slv00020

Module
slv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slv00020]
slv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:slv00020]
slv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slv00020]
slv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slv00020]
slv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slv00020]
Other DBs
GO: 0006099
Organism
Streptomyces lividans [GN:slv]
Gene
SLIV_16490  citA; Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SLIV_23990  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
SLIV_09445  citrate synthase [KO:K01647] [EC:2.3.3.1]
SLIV_09450  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SLIV_08140  acnA; Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SLIV_04245  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SLIV_31450  acyltransferase [KO:K00658] [EC:2.3.1.61]
SLIV_03660  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SLIV_11955  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SLIV_26810  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SLIV_15295  korA2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SLIV_06795  korA1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SLIV_15300  korB2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SLIV_06800  korB1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SLIV_14320  sucD1; Succinyl-CoA ligase [ADP-forming] subunit alpha-1 [KO:K01902] [EC:6.2.1.5]
SLIV_05495  sucD2; Succinyl-CoA ligase [ADP-forming] subunit alpha-2 [KO:K01902] [EC:6.2.1.5]
SLIV_14325  sucC1; Succinyl-CoA ligase [ADP-forming] subunit beta-1 [KO:K01903] [EC:6.2.1.5]
SLIV_05500  sucC2; Succinyl-CoA ligase [ADP-forming] subunit beta-2 [KO:K01903] [EC:6.2.1.5]
SLIV_33315  sdhA2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SLIV_14095  sdhA1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SLIV_03730  oxidoreductase [KO:K00239] [EC:1.3.5.1]
SLIV_33320  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SLIV_12855  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SLIV_14100  sdhB; Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1 [KO:K00240] [EC:1.3.5.1]
SLIV_33310  cytochrome B subunit [KO:K00241]
SLIV_14085  succinate dehydrogenase membrane subunit [KO:K00241]
SLIV_14090  succinate dehydrogenase membrane subunit [KO:K00242]
SLIV_13165  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SLIV_13175  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SLIV_14235  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SLIV_35210  pyc-1; Pyruvate carboxylase 1 [KO:K01958] [EC:6.4.1.1]
SLIV_13500  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
SLIV_25830  aceE2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SLIV_26795  aceE3; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SLIV_03655  aceE1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SLIV_26805  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slv00010  Glycolysis / Gluconeogenesis
slv00053  Ascorbate and aldarate metabolism
slv00061  Fatty acid biosynthesis
slv00071  Fatty acid degradation
slv00190  Oxidative phosphorylation
slv00220  Arginine biosynthesis
slv00250  Alanine, aspartate and glutamate metabolism
slv00280  Valine, leucine and isoleucine degradation
slv00350  Tyrosine metabolism
slv00470  D-Amino acid metabolism
slv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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