KEGG   PATHWAY: sme00030
Entry
sme00030                    Pathway                                
Name
Pentose phosphate pathway - Sinorhizobium meliloti 1021
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sme00030  Pentose phosphate pathway
sme00030

Module
sme_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sme00030]
sme_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sme00030]
sme_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sme00030]
sme_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sme00030]
sme_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sme00030]
sme_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sme00030]
Other DBs
GO: 0006098
Organism
Sinorhizobium meliloti 1021 [GN:sme]
Gene
SMc02163  pgi; Probable glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SMc02042  pgiA1; Putative glucose-6-phosphate isomerase 1 [KO:K06859] [EC:5.3.1.9]
SM_b20857  putative glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
SMc03070  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SMc03069  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
SMc04262  gnd; Probable 6-phosphogluconate dehydrogenase (decarboxylating) protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SM_b20195  ppe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SMc00511  rpe; Probable D-ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SM_b20200  cbbT; putative transketolase protein [KO:K00615] [EC:2.2.1.1]
SMc00269  Putative transketolase beta subunit [KO:K00615] [EC:2.2.1.1]
SMc02342  tkt1; Probable transketolase [KO:K00615] [EC:2.2.1.1]
SMc03978  tkt2; Probable transketolase [KO:K00615] [EC:2.2.1.1]
SMc00270  Putative transketolase alpha subunit [KO:K00615] [EC:2.2.1.1]
SMc02495  tal; Putative transaldolase [KO:K00616] [EC:2.2.1.2]
SMc00152  rpiA; Probable ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
SM_b20371  putative ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
SMc04146  Putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SMa1084  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SMc02333  Probable deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SM_b21300  deoC; putative deoxyribose-phosphate aldolase protein [KO:K01619] [EC:4.1.2.4]
SMc01103  rbsK; Probable ribokinase [KO:K00852] [EC:2.7.1.15]
SMc04119  deoB; Probable phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SMc03925  pgm; Probable phosphoglucomutase (glucose phosphomutase) [KO:K01835] [EC:5.4.2.2]
SM_b21081  manB; phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SM_b21170  phnN_OR_nitR; guanylate kinase [KO:K05774] [EC:2.7.4.23]
SMc02686  prsA; Probable ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SMc03068  edd; Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SMc02043  eda1; Probable KHG/KDPG aldolase (includes: 4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase) [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SMc03153  eda2; Probable KHG/KDPG aldolase (includes: 4-hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase) [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SMc00110  gcd; Probable glucose dehydrogenase (pyrroloquinoline-quinone) protein [KO:K00117] [EC:1.1.5.2]
SM_b20453  putative gluconolactonase precursor protein [KO:K01053] [EC:3.1.1.17]
SMa0196  gluconolactonase [KO:K01053] [EC:3.1.1.17]
SMa0514  idnK; IdnK gluconate kinase IdnK [KO:K00851] [EC:2.7.1.12]
SM_b21119  gntK; gluconokinase [KO:K00851] [EC:2.7.1.12]
SMc01531  kdgK; Putative 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
SM_b20678  ttuD2; putative hydroxypyruvate reductase protein [KO:K11529] [EC:2.7.1.165]
SMc04389  ttuD1; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
SMa1406  ttuD3; TtuD3 hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
SMc03983  fbaB; Probable fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
SM_b20199  cbbA; putative fructose-1,6-bisphosphate aldolase protein [KO:K01624] [EC:4.1.2.13]
SM_b21192  cbbA2; putative fructose-bisphosphate aldolase protein [KO:K01624] [EC:4.1.2.13]
SM_b20202  cbbF; putative D-fructose-1,6-bisphosphatase protein [KO:K03841] [EC:3.1.3.11]
SMc01852  pfp; Probable PPi-phosphofructokinase, (pyrophosphate-fructose-6-phosphate 1-phosphotransferase) [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sme00010  Glycolysis / Gluconeogenesis
sme00040  Pentose and glucuronate interconversions
sme00052  Galactose metabolism
sme00230  Purine metabolism
sme00240  Pyrimidine metabolism
sme00340  Histidine metabolism
sme00630  Glyoxylate and dicarboxylate metabolism
sme00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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