KEGG   PATHWAY: smon00020
Entry
smon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Spirosoma montaniterrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smon00020  Citrate cycle (TCA cycle)
smon00020

Module
smon_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smon00020]
smon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smon00020]
smon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smon00020]
smon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smon00020]
smon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smon00020]
Other DBs
GO: 0006099
Organism
Spirosoma montaniterrae [GN:smon]
Gene
AWR27_17085  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWR27_05365  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWR27_13450  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWR27_09490  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWR27_17145  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AWR27_05745  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
AWR27_17140  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AWR27_24485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWR27_23475  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWR27_00450  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWR27_08790  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWR27_19305  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWR27_19310  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AWR27_19300  succinate dehydrogenase [KO:K00241]
AWR27_04160  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AWR27_24675  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWR27_04185  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWR27_16395  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AWR27_04790  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AWR27_20680  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AWR27_20915  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AWR27_08330  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smon00010  Glycolysis / Gluconeogenesis
smon00053  Ascorbate and aldarate metabolism
smon00061  Fatty acid biosynthesis
smon00071  Fatty acid degradation
smon00190  Oxidative phosphorylation
smon00220  Arginine biosynthesis
smon00250  Alanine, aspartate and glutamate metabolism
smon00280  Valine, leucine and isoleucine degradation
smon00350  Tyrosine metabolism
smon00470  D-Amino acid metabolism
smon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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