KEGG   PATHWAY: snea00020
Entry
snea00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sneathiella marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
snea00020  Citrate cycle (TCA cycle)
snea00020

Module
snea_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:snea00020]
snea_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:snea00020]
snea_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:snea00020]
snea_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:snea00020]
snea_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:snea00020]
Other DBs
GO: 0006099
Organism
Sneathiella marina [GN:snea]
Gene
NBZ79_10435  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NBZ79_01395  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NBZ79_11120  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NBZ79_01620  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NBZ79_01625  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NBZ79_01630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NBZ79_10330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NBZ79_03705  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NBZ79_03700  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NBZ79_01615  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NBZ79_01610  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NBZ79_01575  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NBZ79_01580  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NBZ79_01565  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NBZ79_01570  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NBZ79_15695  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NBZ79_01605  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NBZ79_19470  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NBZ79_10345  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NBZ79_10340  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NBZ79_10335  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
snea00010  Glycolysis / Gluconeogenesis
snea00053  Ascorbate and aldarate metabolism
snea00061  Fatty acid biosynthesis
snea00071  Fatty acid degradation
snea00190  Oxidative phosphorylation
snea00220  Arginine biosynthesis
snea00250  Alanine, aspartate and glutamate metabolism
snea00280  Valine, leucine and isoleucine degradation
snea00350  Tyrosine metabolism
snea00470  D-Amino acid metabolism
snea00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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