KEGG   PATHWAY: sod00240
Entry
sod00240                    Pathway                                
Name
Pyrimidine metabolism - Sodalis praecaptivus
Class
Metabolism; Nucleotide metabolism
Pathway map
sod00240  Pyrimidine metabolism
sod00240

Module
sod_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sod00240]
sod_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sod00240]
sod_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sod00240]
sod_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sod00240]
Other DBs
GO: 0006220 0006213
Organism
Sodalis praecaptivus [GN:sod]
Gene
Sant_3389  carB; Carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
Sant_3390  carA; Carbamoyl phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
Sant_3831  pyrB; Aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
Sant_3832  pyrI; Aspartate carbamoyltransferase regulatory subunit [KO:K00610]
Sant_2345  Dihydroorotase [KO:K01465] [EC:3.5.2.3]
Sant_2487  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
Sant_2609  pyrD; Dihydroorotate dehydrogenase 2 [KO:K00254] [EC:1.3.5.2]
Sant_4023  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
Sant_1875  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
Sant_0898  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
Sant_1129  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Sant_3263  mazG; Nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
Sant_0504  yhdE; Putative septum formation inhibitor protein [KO:K06287] [EC:3.6.1.-]
Sant_1012  hypothetical protein [KO:K07043] [EC:3.6.1.-]
Sant_3262  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
Sant_2632  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
Sant_1823  nudG; Putative pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
Sant_1446  udk; Uridine kinase [KO:K00876] [EC:2.7.1.48]
Sant_3245  surE; Stationary phase survival protein [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Sant_0246  udp; Uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
Sant_3047  Mannose-6-phosphate isomerase [KO:K09913] [EC:2.4.2.1 2.4.2.2]
Sant_1204  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
Sant_0885  ygdH; Lysine decarboxylase family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
Sant_1438  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
Sant_0390  Cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
Sant_3837  Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
Sant_1447  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
Sant_1367  nrdA; Ribonucleoside-diphosphate reductase 1 alpha subunit [KO:K00525] [EC:1.17.4.1]
Sant_0949  nrdE; Ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
Sant_1366  nrdB; Ribonucleoside-diphosphate reductase 1 beta chain [KO:K00526] [EC:1.17.4.1]
Sant_0948  nrdF; Ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
Sant_1339  yfbR; Metal dependent phosphohydrolase [KO:K08722] [EC:3.1.3.89]
Sant_2473  tmk; Thymidylate kinase (dTMP kinase) [KO:K00943] [EC:2.7.4.9]
Sant_4021  dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
Sant_3426  deoA; Thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
Sant_1833  tdk; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
Sant_0855  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
Sant_P0040  N-carbamyl-L-cysteine amidohydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Sant_1760  Allantoate amidohydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Sant_P0347  Amidase, hydantoinase/carbamoylase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Sant_1995  3-hydroxy acid dehydrogenase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
sod00030  Pentose phosphate pathway
sod00220  Arginine biosynthesis
sod00250  Alanine, aspartate and glutamate metabolism
sod00280  Valine, leucine and isoleucine degradation
sod00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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