KEGG   PATHWAY: sphd00362
Entry
sphd00362                   Pathway                                
Name
Benzoate degradation - Rhizorhabdus wittichii DC-6
Class
Metabolism; Xenobiotics biodegradation and metabolism
Pathway map
sphd00362  Benzoate degradation
sphd00362

Module
sphd_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:sphd00362]
Other DBs
UMBBD: benz2 benz abs
GO: 0043639
Organism
Rhizorhabdus wittichii DC-6 [GN:sphd]
Gene
HY78_12345  benzoate 1,2-dioxygenase large subunit [KO:K05549] [EC:1.14.12.10 1.14.12.-]
HY78_12340  benzoate 1,2-dioxygenase small subunit [KO:K05550] [EC:1.14.12.10 1.14.12.-]
HY78_12335  benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase [KO:K05783] [EC:1.3.1.25 1.3.1.-]
HY78_21630  catechol 1,2-dioxygenase [KO:K03381] [EC:1.13.11.1]
HY78_21640  muconate cycloisomerase [KO:K01856] [EC:5.5.1.1]
HY78_29510  chloromuconate cycloisomerase [KO:K01856] [EC:5.5.1.1]
HY78_21635  muconolactone delta-isomerase [KO:K03464] [EC:5.3.3.4]
HY78_07920  3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
HY78_21625  3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
HY78_29490  3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
HY78_05270  acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
HY78_15515  acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
HY78_18140  acetyl-CoA acetyltransferase [KO:K00632] [EC:2.3.1.16]
HY78_22745  thiolase [KO:K00632] [EC:2.3.1.16]
HY78_22935  3-oxoadipyl-CoA thiolase [KO:K07823] [EC:2.3.1.174]
HY78_16805  bleomycin resistance protein [KO:K10621] [EC:1.13.11.- 1.13.11.14]
HY78_06680  2-keto-4-pentenoate hydratase [KO:K02554] [EC:4.2.1.80]
HY78_17390  2-keto-4-pentenoate hydratase [KO:K02554] [EC:4.2.1.80]
HY78_14960  2-keto-4-pentenoate hydratase [KO:K02554] [EC:4.2.1.80]
HY78_22130  2-keto-4-pentenoate hydratase [KO:K02554] [EC:4.2.1.80]
HY78_22985  hypothetical protein [KO:K02554] [EC:4.2.1.80]
HY78_14950  4-hydroxy-2-oxovalerate aldolase [KO:K01666] [EC:4.1.3.39]
HY78_17380  4-hydroxy-2-oxovalerate aldolase [KO:K01666] [EC:4.1.3.39]
HY78_14955  acetaldehyde dehydrogenase (acetylating) [KO:K04073] [EC:1.2.1.10]
HY78_17385  acetaldehyde dehydrogenase (acetylating) [KO:K04073] [EC:1.2.1.10]
HY78_06685  2-hydroxymuconic semialdehyde dehydrogenase [KO:K10217] [EC:1.2.1.32 1.2.1.85]
HY78_05155  isomerase [KO:K01821] [EC:5.3.2.6]
HY78_06675  4-oxalocrotonate decarboxylase [KO:K01617] [EC:4.1.1.77]
HY78_22125  4-oxalocrotonate decarboxylase [KO:K01617] [EC:4.1.1.77]
HY78_10125  acyl-CoA dehydrogenase [KO:K20942] [EC:1.14.14.27]
HY78_22020  acyl-CoA dehydrogenase [KO:K20942] [EC:1.14.14.27]
HY78_16675  catechol 1,2-dioxygenase [KO:K04098] [EC:1.13.11.37]
HY78_07925  hypothetical protein [KO:K00217] [EC:1.3.1.32]
HY78_08160  maleylacetate reductase [KO:K00217] [EC:1.3.1.32]
HY78_28870  hypothetical protein [KO:K00217] [EC:1.3.1.32]
HY78_28940  hypothetical protein [KO:K00217] [EC:1.3.1.32]
HY78_01380  carboxymuconolactone decarboxylase [KO:K01607] [EC:4.1.1.44]
HY78_29885  carboxymuconolactone decarboxylase [KO:K01607] [EC:4.1.1.44]
HY78_26560  carboxymuconolactone decarboxylase [KO:K01607] [EC:4.1.1.44]
HY78_10225  4-hydroxy-4-methyl-2-oxoglutarate aldolase [KO:K10218] [EC:4.1.3.17]
HY78_10245  diguanylate cyclase [KO:K10218] [EC:4.1.3.17]
HY78_25685  dimethylmenaquinone methyltransferase [KO:K10218] [EC:4.1.3.17]
HY78_13195  hypothetical protein [KO:K10218] [EC:4.1.3.17]
HY78_13200  dimethylmenaquinone methyltransferase [KO:K10218] [EC:4.1.3.17]
HY78_09210  cytochrome P450 [KO:K22553] [EC:1.14.99.15]
HY78_22200  pyridine nucleotide-disulfide oxidoreductase [KO:K00529] [EC:1.18.1.3]
HY78_15240  pyridine nucleotide-disulfide oxidoreductase [KO:K00529] [EC:1.18.1.3]
HY78_16365  2Fe-2S ferredoxin [KO:K04755]
HY78_16790  ferredoxin [KO:K04755]
HY78_21525  2Fe-2S ferredoxin [KO:K04755]
HY78_26295  ferredoxin [KO:K04755]
HY78_13385  ferredoxin [KO:K04755]
HY78_26720  (2Fe-2S)-binding protein [KO:K04755]
HY78_22590  thioesterase [KO:K01075] [EC:3.1.2.23]
HY78_22550  4-hydroxybenzoate--CoA ligase [KO:K04110] [EC:6.2.1.25]
HY78_17880  cyclohexanecarboxylate-CoA ligase [KO:K04116] [EC:6.2.1.-]
HY78_14985  short-chain dehydrogenase [KO:K07535] [EC:1.1.1.-]
HY78_14240  oxidoreductase [KO:K07535] [EC:1.1.1.-]
HY78_26210  short-chain dehydrogenase [KO:K07535] [EC:1.1.1.-]
HY78_05265  3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
HY78_26505  3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
HY78_22555  3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
HY78_21465  enoyl-CoA hydratase [KO:K07516] [EC:1.1.1.35]
HY78_22585  acyl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
HY78_16570  enoyl-CoA hydratase [KO:K01692] [EC:4.2.1.17]
HY78_23415  enoyl-CoA hydratase [KO:K01692] [EC:4.2.1.17]
HY78_11000  3-hydroxybutyryl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
HY78_18160  3-hydroxyacyl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
HY78_18240  hypothetical protein [KO:K00074] [EC:1.1.1.157]
HY78_22945  3-hydroxyacyl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
HY78_23020  3-hydroxybutyryl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
HY78_06090  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_06120  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_06260  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_11025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_17625  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_23500  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_28920  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_16305  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_24790  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_16730  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_21485  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_17760  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_26385  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_18260  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HY78_18395  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00036  Oxaloacetate
C00084  Acetaldehyde
C00090  Catechol
C00091  Succinyl-CoA
C00146  Phenol
C00156  4-Hydroxybenzoate
C00180  Benzoate
C00196  2,3-Dihydroxybenzoate
C00230  3,4-Dihydroxybenzoate
C00332  Acetoacetyl-CoA
C00512  Benzoyl-CoA
C00527  Glutaryl-CoA
C00530  Hydroquinone
C00587  3-Hydroxybenzoate
C00596  2-Hydroxy-2,4-pentadienoate
C00628  2,5-Dihydroxybenzoate
C00682  2-Hydroxymuconate semialdehyde
C00846  3-Oxoadipate
C00877  Crotonoyl-CoA
C01063  Pimeloyl-CoA
C01144  (S)-3-Hydroxybutanoyl-CoA
C01163  3-Carboxy-cis,cis-muconate
C01278  2-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C01407  Benzene
C01751  Resorcinol
C02222  2-Maleylacetate
C02232  3-Oxoadipyl-CoA
C02411  Glutaconyl-1-CoA
C02480  cis,cis-Muconate
C02501  2-Hydroxymuconate
C02519  4-Methoxybenzoate
C02814  Benzene-1,2,4-triol
C02949  4-Hydroxybenzoyl-CoA
C03453  gamma-Oxalocrotonate
C03586  2-Oxo-2,3-dihydrofuran-5-acetate
C03589  4-Hydroxy-2-oxopentanoate
C03671  2-Pyrone-4,6-dicarboxylate
C03676  3-Hydroxy-cis,cis-muconate
C03767  4-Oxocyclohexanecarboxylate
C04091  cis-1,2-Dihydrobenzene-1,2-diol
C04115  4-Carboxy-4-hydroxy-2-oxoadipate
C04324  (1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate
C04404  trans-4-Hydroxycyclohexanecarboxylate
C04434  (1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate
C04480  3-Carboxy-2-hydroxymuconate semialdehyde
C04484  4-Carboxy-2-hydroxymuconate semialdehyde
C04553  3-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C05375  2-Hydroxy-2-hydropyrone-4,6-dicarboxylate
C06033  Parapyruvate
C06035  4-Methylene-2-oxoglutarate
C06321  (1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate
C06322  Cyclohexa-1,5-diene-1-carbonyl-CoA
C06333  2-Aminobenzenesulfonate
C06336  3-Sulfocatechol
C06714  3-Hydroxypimeloyl-CoA
C06715  3-Oxopimeloyl-CoA
C06723  6-Carboxyhex-2-enoyl-CoA
C06749  6-Hydroxycyclohex-1-ene-1-carbonyl-CoA
C09809  Cyclohexa-2,5-diene-1-carbonyl-CoA
C09810  Cyclohexa-1,4-diene-1-carbonyl-CoA
C09811  Cyclohex-1-ene-1-carbonyl-CoA
C09812  2-Hydroxycyclohexane-1-carbonyl-CoA
C09813  2-Oxocyclohexane-1-carbonyl-CoA
C09821  6-Oxocyclohex-1-ene-1-carbonyl-CoA
C09822  Cyclohexane-1-carboxylate
C09823  Cyclohexane-1-carbonyl-CoA
C14144  5-Carboxy-2-pentenoyl-CoA
C14610  (S)-5-Oxo-2,5-dihydrofuran-2-acetate
C19682  3,4-Didehydroadipyl-CoA
C19683  3,4-Didehydroadipyl-CoA semialdehyde
C19684  2,3-Epoxy-2,3-dihydrobenzoyl-CoA
C21298  2,6-Dihydroxybenzoate
C22885  cis-4-Hydroxycyclohexane-1-carboxylate
C22887  4-Oxocyclohex-2-ene-1-carboxylate
C22920  4-Oxocyclohex-2,5-dienecarboxylate
Reference
  Authors
Carmona M, Zamarro MT, Blazquez B, Durante-Rodriguez G, Juarez JF, Valderrama JA, Barragan MJ, Garcia JL, Diaz E
  Title
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.
  Journal
Microbiol Mol Biol Rev 73:71-133 (2009)
DOI:10.1128/MMBR.00021-08
Reference
  Authors
Hara H, Masai E, Miyauchi K, Katayama Y, Fukuda M.
  Title
Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.
  Journal
J Bacteriol 185:41-50 (2003)
DOI:10.1128/JB.185.1.41-50.2003
Reference
  Authors
Maruyama K, Shibayama T, Ichikawa A, Sakou Y, Yamada S, Sugisaki H.
  Title
Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1.
  Journal
Biosci Biotechnol Biochem 68:1434-41 (2004)
DOI:10.1271/bbb.68.1434
Reference
  Authors
Mampel J, Ruff J, Junker F, Cook AM.
  Title
The oxygenase component of the 2-aminobenzenesulfonate dioxygenase system from Alcaligenes sp. strain O-1.
  Journal
Microbiology 145 ( Pt 11):3255-64 (1999)
DOI:10.1099/00221287-145-11-3255
Reference
PMID:8002948
  Authors
Junker F, Field JA, Bangerter F, Ramsteiner K, Kohler HP, Joannou CL, Mason JR, Leisinger T, Cook AM.
  Title
Oxygenation and spontaneous deamination of 2-aminobenzenesulphonic acid in Alcaligenes sp. strain O-1 with subsequent meta ring cleavage and spontaneous desulphonation to 2-hydroxymuconic acid.
  Journal
Biochem J 300 ( Pt 2):429-36 (1994)
DOI:10.1042/bj3000429
Reference
PMID:8990279
  Authors
Harwood CS, Gibson J.
  Title
Shedding light on anaerobic benzene ring degradation: a process unique to prokaryotes?
  Journal
J Bacteriol 179:301-9 (1997)
DOI:10.1128/JB.179.2.301-309.1997
Reference
  Authors
Peters F, Shinoda Y, McInerney MJ, Boll M.
  Title
Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.
  Journal
J Bacteriol 189:1055-60 (2007)
DOI:10.1128/JB.01467-06
Reference
  Authors
Cowles CE, Nichols NN, Harwood CS.
  Title
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida.
  Journal
J Bacteriol 182:6339-46 (2000)
DOI:10.1128/JB.182.22.6339-6346.2000
Reference
  Authors
Smith MA, Weaver VB, Young DM, Ornston LN.
  Title
Genes for chlorogenate and hydroxycinnamate catabolism (hca) are linked to functionally related genes in the dca-pca-qui-pob-hca chromosomal cluster of Acinetobacter sp. strain ADP1.
  Journal
Appl Environ Microbiol 69:524-32 (2003)
DOI:10.1128/AEM.69.1.524-532.2003
Reference
  Authors
Kuntze K, Shinoda Y, Moutakki H, McInerney MJ, Vogt C, Richnow HH, Boll M
  Title
6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.
  Journal
Environ Microbiol 10:1547-56 (2008)
DOI:10.1111/j.1462-2920.2008.01570.x
Reference
  Authors
Pelletier DA, Harwood CS
  Title
2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustris.
  Journal
J Bacteriol 182:2753-60 (2000)
DOI:10.1128/JB.182.10.2753-2760.2000
Reference
  Authors
Elshahed MS, Bhupathiraju VK, Wofford NQ, Nanny MA, McInerney MJ
  Title
Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms.
  Journal
Appl Environ Microbiol 67:1728-38 (2001)
DOI:10.1128/AEM.67.4.1728-1738.2001
Reference
  Authors
Nogales J, Canales A, Jimenez-Barbero J, Serra B, Pingarron JM, Garcia JL, Diaz E
  Title
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.
  Journal
Mol Microbiol 79:359-74 (2011)
DOI:10.1111/j.1365-2958.2010.07448.x
Related
pathway
sphd00010  Glycolysis / Gluconeogenesis
sphd00020  Citrate cycle (TCA cycle)
sphd00350  Tyrosine metabolism
sphd00360  Phenylalanine metabolism
sphd00361  Chlorocyclohexane and chlorobenzene degradation
sphd00627  Aminobenzoate degradation
sphd00790  Folate biosynthesis
KO pathway
ko00362   
LinkDB

DBGET integrated database retrieval system