KEGG   PATHWAY: spii00020
Entry
spii00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas piscis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spii00020  Citrate cycle (TCA cycle)
spii00020

Module
spii_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spii00020]
spii_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spii00020]
spii_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spii00020]
Other DBs
GO: 0006099
Organism
Sphingomonas piscis [GN:spii]
Gene
G7077_13485  citrate synthase [KO:K01647] [EC:2.3.3.1]
G7077_00110  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G7077_10440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G7077_10445  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G7077_10470  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G7077_10605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G7077_02570  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
G7077_02565  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
G7077_10435  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G7077_06295  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G7077_05330  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G7077_10415  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G7077_05340  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G7077_05335  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
G7077_07560  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G7077_10430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G7077_13610  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
G7077_00525  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G7077_00520  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
G7077_10595  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spii00010  Glycolysis / Gluconeogenesis
spii00053  Ascorbate and aldarate metabolism
spii00061  Fatty acid biosynthesis
spii00071  Fatty acid degradation
spii00190  Oxidative phosphorylation
spii00220  Arginine biosynthesis
spii00250  Alanine, aspartate and glutamate metabolism
spii00280  Valine, leucine and isoleucine degradation
spii00350  Tyrosine metabolism
spii00470  D-Amino acid metabolism
spii00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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