KEGG   PATHWAY: spir00030
Entry
spir00030                   Pathway                                
Name
Pentose phosphate pathway - Spirosoma pollinicola
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spir00030  Pentose phosphate pathway
spir00030

Module
spir_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:spir00030]
spir_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:spir00030]
spir_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:spir00030]
spir_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:spir00030]
spir_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:spir00030]
Other DBs
GO: 0006098
Organism
Spirosoma pollinicola [GN:spir]
Gene
CWM47_09005  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CWM47_00175  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
CWM47_00165  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
CWM47_15525  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
CWM47_24655  gnd; 6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CWM47_07665  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
CWM47_13640  transketolase [KO:K00615] [EC:2.2.1.1]
CWM47_13650  transketolase [KO:K00615] [EC:2.2.1.1]
CWM47_02175  transketolase [KO:K00615] [EC:2.2.1.1]
CWM47_02190  transketolase [KO:K00615] [EC:2.2.1.1]
CWM47_20330  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CWM47_18030  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
CWM47_20335  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CWM47_00180  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
CWM47_22010  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
CWM47_05160  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CWM47_25765  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CWM47_12330  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
CWM47_18220  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
CWM47_32360  phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
CWM47_25730  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CWM47_22235  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CWM47_06790  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CWM47_01685  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
CWM47_08090  sugar dehydrogenase [KO:K00034] [EC:1.1.1.47]
CWM47_22245  pyrrolo-quinoline quinone [KO:K00117] [EC:1.1.5.2]
CWM47_27705  quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
CWM47_01175  pyrrolo-quinoline quinone [KO:K00117] [EC:1.1.5.2]
CWM47_07455  pyrrolo-quinoline quinone [KO:K00117] [EC:1.1.5.2]
CWM47_16625  heme-binding protein [KO:K00117] [EC:1.1.5.2]
CWM47_19585  gluconolactonase [KO:K01053] [EC:3.1.1.17]
CWM47_06570  gluconolactonase [KO:K01053] [EC:3.1.1.17]
CWM47_24985  gluconolactonase [KO:K01053] [EC:3.1.1.17]
CWM47_22160  gluconolactonase [KO:K01053] [EC:3.1.1.17]
CWM47_29700  hypothetical protein [KO:K06152] [EC:1.1.99.3]
CWM47_09450  carbohydrate kinase [KO:K25031] [EC:2.7.1.12]
CWM47_30025  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
CWM47_06795  carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
CWM47_22190  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
CWM47_13240  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CWM47_06780  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
CWM47_05725  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
spir00010  Glycolysis / Gluconeogenesis
spir00040  Pentose and glucuronate interconversions
spir00052  Galactose metabolism
spir00230  Purine metabolism
spir00240  Pyrimidine metabolism
spir00340  Histidine metabolism
spir00630  Glyoxylate and dicarboxylate metabolism
spir00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system