KEGG   PATHWAY: spis00020
Entry
spis00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stylophora pistillata (Smooth Cauliflower Coral)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spis00020  Citrate cycle (TCA cycle)
spis00020

Module
spis_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spis00020]
spis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spis00020]
spis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spis00020]
Other DBs
GO: 0006099
Organism
Stylophora pistillata (Smooth Cauliflower Coral) [GN:spis]
Gene
111323473  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111328982  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
111338056  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
111343764  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111338535  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
111324807  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111338973  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111334096  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111332833  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
111329463  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111333083  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111338310  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
111322697  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111325549  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111335656  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111342152  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
111329218  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111328457  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
111328458  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
111346368  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111319376  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111336554  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111342608  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
111337936  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
111337945  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
111337595  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111344753  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111343902  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spis00010  Glycolysis / Gluconeogenesis
spis00053  Ascorbate and aldarate metabolism
spis00061  Fatty acid biosynthesis
spis00062  Fatty acid elongation
spis00071  Fatty acid degradation
spis00190  Oxidative phosphorylation
spis00220  Arginine biosynthesis
spis00250  Alanine, aspartate and glutamate metabolism
spis00280  Valine, leucine and isoleucine degradation
spis00350  Tyrosine metabolism
spis00470  D-Amino acid metabolism
spis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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