KEGG   PATHWAY: spot00020
Entry
spot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfitobacter pontiacus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spot00020  Citrate cycle (TCA cycle)
spot00020

Module
spot_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spot00020]
spot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spot00020]
spot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spot00020]
spot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spot00020]
spot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spot00020]
Other DBs
GO: 0006099
Organism
Sulfitobacter pontiacus [GN:spot]
Gene
G6548_10855  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
G6548_11920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
G6548_08825  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G6548_14600  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G6548_04105  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G6548_04100  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G6548_04085  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G6548_08305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G6548_04110  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G6548_04125  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G6548_04175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G6548_04190  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G6548_04165  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G6548_04170  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
G6548_10220  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G6548_04160  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G6548_11665  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
G6548_14165  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
G6548_08240  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G6548_08235  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
G6548_08230  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spot00010  Glycolysis / Gluconeogenesis
spot00053  Ascorbate and aldarate metabolism
spot00061  Fatty acid biosynthesis
spot00071  Fatty acid degradation
spot00190  Oxidative phosphorylation
spot00220  Arginine biosynthesis
spot00250  Alanine, aspartate and glutamate metabolism
spot00280  Valine, leucine and isoleucine degradation
spot00350  Tyrosine metabolism
spot00470  D-Amino acid metabolism
spot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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