KEGG   PATHWAY: srhi00020
Entry
srhi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas rhizophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srhi00020  Citrate cycle (TCA cycle)
srhi00020

Module
srhi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srhi00020]
Other DBs
GO: 0006099
Organism
Sphingomonas rhizophila [GN:srhi]
Gene
H9L12_12910  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
H9L12_05175  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9L12_08770  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H9L12_06960  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
H9L12_08765  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H9L12_08615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9L12_08760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9L12_02425  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H9L12_02430  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H9L12_08775  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H9L12_09685  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H9L12_08800  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H9L12_09695  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
H9L12_09690  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
H9L12_12895  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H9L12_08780  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H9L12_05580  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
H9L12_04725  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H9L12_04730  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
H9L12_08630  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srhi00010  Glycolysis / Gluconeogenesis
srhi00061  Fatty acid biosynthesis
srhi00071  Fatty acid degradation
srhi00190  Oxidative phosphorylation
srhi00220  Arginine biosynthesis
srhi00250  Alanine, aspartate and glutamate metabolism
srhi00280  Valine, leucine and isoleucine degradation
srhi00350  Tyrosine metabolism
srhi00470  D-Amino acid metabolism
srhi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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