KEGG   PATHWAY: srm03430
Entry
srm03430                    Pathway                                
Name
Mismatch repair - Salinibacter ruber M8
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
srm03430  Mismatch repair
srm03430

Other DBs
GO: 0006298
Organism
Salinibacter ruber M8 [GN:srm]
Gene
SRM_01808  mutS; DNA mismatch repair protein MutS [KO:K03555]
SRM_00825  mutS2; DNA mismatch repair protein MutS2 [KO:K07456]
SRM_01919  mutL; DNA mismatch repair protein mutL [KO:K03572]
SRM_p56012  pcrA; ATP-dependent DNA helicase pcrA [KO:K03657] [EC:5.6.2.4]
SRM_00621  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
SRM_00593  uvrD; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
SRM_00897  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
SRM_02541  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
SRM_00914  xseA; Probable exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
SRM_00911  xseB; Probable exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
SRM_p56014  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
SRM_02461  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
SRM_00604  ssb; Single-strand binding protein [KO:K03111]
SRM_00895  ssb; Single-strand binding protein [KO:K03111]
SRM_01173  dnaE2; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
SRM_00003  dnaN; DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
SRM_02776  dnaX; DNA polymerase III subunit tau [KO:K02343] [EC:2.7.7.7]
SRM_00580  holA; DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
SRM_01041  dnaX; DNA polymerase III gamma/tau subunit [KO:K02341] [EC:2.7.7.7]
SRM_01633  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
SRM_01143  polC; DNA polymerase III polC-type [KO:K02342] [EC:2.7.7.7]
SRM_00894  dnaQ; DNA polymerase III, epsilon chain [KO:K02342] [EC:2.7.7.7]
SRM_01077  ligA; NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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