KEGG   PATHWAY: srub00630
Entry
srub00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Salinigranum rubrum
Class
Metabolism; Carbohydrate metabolism
Pathway map
srub00630  Glyoxylate and dicarboxylate metabolism
srub00630

Module
srub_M00012  Glyoxylate cycle [PATH:srub00630]
srub_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:srub00630]
srub_M00968  Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:srub00630]
Other DBs
GO: 0046487 0043648
Organism
Salinigranum rubrum [GN:srub]
Gene
C2R22_18875  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C2R22_04315  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
C2R22_05490  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C2R22_09755  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
C2R22_20215  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2R22_01460  citrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_14915  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_14920  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C2R22_18105  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C2R22_22905  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2R22_23350  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2R22_05130  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
C2R22_08185  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
C2R22_10535  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C2R22_06390  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
C2R22_08700  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C2R22_11795  carbamoyl phosphate synthase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
C2R22_09935  pyruvate carboxylase subunit A [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
C2R22_11720  methylmalonyl-CoA carboxyltransferase [KO:K19312] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
C2R22_11725  acc operon protein [KO:K22568] [EC:6.4.1.2 6.4.1.3]
C2R22_05190  methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
C2R22_05485  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
C2R22_08695  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
C2R22_21540  malate synthase [KO:K19282] [EC:4.1.3.24 3.1.2.30]
C2R22_12125  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C2R22_16770  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C2R22_09365  phosphoglycolate phosphatase [KO:K22223] [EC:3.1.3.18]
C2R22_02660  rbcL; type III ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
C2R22_11045  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
C2R22_04850  glutamate synthase large subunit [KO:K00284] [EC:1.4.7.1]
C2R22_19245  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C2R22_12640  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2R22_13990  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
C2R22_01755  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C2R22_14000  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C2R22_20330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2R22_01365  glycerol dehydrogenase [KO:K26209] [EC:1.1.1.-]
C2R22_03485  fuculose phosphate aldolase [KO:K01636] [EC:4.1.2.-]
C2R22_00685  3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C2R22_00830  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C2R22_06540  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C2R22_21620  hypothetical protein [KO:K07130] [EC:3.5.1.9]
C2R22_18190  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
srub00010  Glycolysis / Gluconeogenesis
srub00020  Citrate cycle (TCA cycle)
srub00030  Pentose phosphate pathway
srub00053  Ascorbate and aldarate metabolism
srub00071  Fatty acid degradation
srub00230  Purine metabolism
srub00250  Alanine, aspartate and glutamate metabolism
srub00260  Glycine, serine and threonine metabolism
srub00620  Pyruvate metabolism
srub00710  Carbon fixation by Calvin cycle
srub00750  Vitamin B6 metabolism
srub00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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