KEGG   PATHWAY: ssd00020
Entry
ssd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus pseudintermedius HKU10-03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssd00020  Citrate cycle (TCA cycle)
ssd00020

Module
ssd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssd00020]
ssd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssd00020]
ssd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssd00020]
ssd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssd00020]
ssd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssd00020]
Other DBs
GO: 0006099
Organism
Staphylococcus pseudintermedius HKU10-03 [GN:ssd]
Gene
SPSINT_1453  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
SPSINT_1079  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SPSINT_1452  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPSINT_1126  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SPSINT_1125  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SPSINT_1212  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
SPSINT_0805  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
SPSINT_1022  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SPSINT_1023  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SPSINT_0974  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
SPSINT_0973  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
SPSINT_0849  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SPSINT_0850  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SPSINT_0848  Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
SPSINT_1599  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SPSINT_0402  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SPSINT_2304  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SPSINT_2035  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SPSINT_0823  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
SPSINT_1551  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SPSINT_0802  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SPSINT_0803  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SPSINT_0804  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssd00010  Glycolysis / Gluconeogenesis
ssd00053  Ascorbate and aldarate metabolism
ssd00061  Fatty acid biosynthesis
ssd00071  Fatty acid degradation
ssd00190  Oxidative phosphorylation
ssd00220  Arginine biosynthesis
ssd00250  Alanine, aspartate and glutamate metabolism
ssd00280  Valine, leucine and isoleucine degradation
ssd00350  Tyrosine metabolism
ssd00470  D-Amino acid metabolism
ssd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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