KEGG   PATHWAY: ssoi00020
Entry
ssoi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces solisilvae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssoi00020  Citrate cycle (TCA cycle)
ssoi00020

Module
ssoi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssoi00020]
ssoi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssoi00020]
ssoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssoi00020]
ssoi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssoi00020]
Other DBs
GO: 0006099
Organism
Streptomyces solisilvae [GN:ssoi]
Gene
I1A49_46055  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
I1A49_17690  citrate synthase [KO:K01647] [EC:2.3.3.1]
I1A49_20800  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
I1A49_33190  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
I1A49_35885  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I1A49_46060  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I1A49_03805  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
I1A49_40695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I1A49_13675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I1A49_26025  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I1A49_26020  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I1A49_34915  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I1A49_20490  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I1A49_34910  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I1A49_20495  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I1A49_28910  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I1A49_05920  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I1A49_20305  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I1A49_28905  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I1A49_05925  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I1A49_20310  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I1A49_05915  succinate dehydrogenase [KO:K00241]
I1A49_20295  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
I1A49_20300  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
I1A49_28595  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I1A49_28575  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I1A49_03320  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I1A49_04170  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I1A49_20450  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I1A49_04630  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
I1A49_28235  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
I1A49_08770  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
I1A49_13690  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
I1A49_14915  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssoi00010  Glycolysis / Gluconeogenesis
ssoi00053  Ascorbate and aldarate metabolism
ssoi00061  Fatty acid biosynthesis
ssoi00071  Fatty acid degradation
ssoi00190  Oxidative phosphorylation
ssoi00220  Arginine biosynthesis
ssoi00250  Alanine, aspartate and glutamate metabolism
ssoi00280  Valine, leucine and isoleucine degradation
ssoi00350  Tyrosine metabolism
ssoi00470  D-Amino acid metabolism
ssoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system