KEGG   PATHWAY: sspl00020
Entry
sspl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salvia splendens (scarlet sage)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sspl00020  Citrate cycle (TCA cycle)
sspl00020

Module
sspl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sspl00020]
sspl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sspl00020]
sspl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sspl00020]
Other DBs
GO: 0006099
Organism
Salvia splendens (scarlet sage) [GN:sspl]
Gene
121756534  citrate synthase, glyoxysomal isoform X1 [KO:K01647] [EC:2.3.3.1]
121759346  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
121777656  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
121804813  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
121805111  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
121808545  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
121809548  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
121771479  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
121799787  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
121801233  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
121789777  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
121794728  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
121766410  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
121796063  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
121755856  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
121755930  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
121758955  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
121773951  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
121777160  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
121755180  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
121743720  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
121785417  isocitrate dehydrogenase [NADP], chloroplastic-like [KO:K00031] [EC:1.1.1.42]
121786168  isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
121775010  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
121776039  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
121805309  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
121806198  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
121747099  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
121787610  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
121787635  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
121748445  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
121748542  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
121762373  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
121762622  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
121752154  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
121765549  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
121744929  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121759195  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121748364  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121790597  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
121751986  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121755648  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121810080  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121798938  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
121748835  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
121792298  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
121771820  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121771955  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121799806  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
121801228  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
121801853  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121749036  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
121792318  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
121807320  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121767638  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121768138  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121796082  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
121761332  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121766043  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121741112  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121743355  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121760995  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121763579  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121794405  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121785895  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
121762982  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
121763278  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
121773372  uncharacterized protein LOC121773372 [KO:K00235] [EC:1.3.5.1]
121788066  uncharacterized protein LOC121788066 isoform X1 [KO:K00235] [EC:1.3.5.1]
121748262  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121777244  uncharacterized protein LOC121777244 [KO:K00235] [EC:1.3.5.1]
121777756  uncharacterized protein LOC121777756 [KO:K00235] [EC:1.3.5.1]
121750960  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121780392  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121782289  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121784056  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
121753633  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
121807470  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
121754261  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
121759632  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
121748125  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
121752160  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
121811310  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
121745115  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
121789165  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
121802209  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
121802431  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
121751942  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
121806229  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
121808572  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
121785006  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121786070  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121773209  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
121773289  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121774232  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
121761888  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
121775998  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
121802610  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121777284  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121803934  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
121805371  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
121806703  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
121780294  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
121782869  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
121756228  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121756833  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121775474  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121791645  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121777940  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121792784  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121753674  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
121756326  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
121798163  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
121759353  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
121746807  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
121746845  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
121802312  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
121794768  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
121756155  pyruvate dehydrogenase E1 component subunit beta-like isoform X1 [KO:K00162] [EC:1.2.4.1]
121756869  pyruvate dehydrogenase E1 component subunit beta-like isoform X1 [KO:K00162] [EC:1.2.4.1]
121772661  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
121787154  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121747036  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121760342  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121775585  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
121776109  pyruvate dehydrogenase E1 component subunit beta-like isoform X1 [KO:K00162] [EC:1.2.4.1]
121789662  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
121751823  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121765544  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121768005  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
121811552  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121745403  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
121771760  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121746747  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121786662  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121750641  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
121778169  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121779494  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121779601  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121794194  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121752515  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121782252  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121782772  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
121769472  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121797762  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sspl00010  Glycolysis / Gluconeogenesis
sspl00053  Ascorbate and aldarate metabolism
sspl00061  Fatty acid biosynthesis
sspl00062  Fatty acid elongation
sspl00071  Fatty acid degradation
sspl00190  Oxidative phosphorylation
sspl00220  Arginine biosynthesis
sspl00250  Alanine, aspartate and glutamate metabolism
sspl00280  Valine, leucine and isoleucine degradation
sspl00350  Tyrosine metabolism
sspl00470  D-Amino acid metabolism
sspl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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