KEGG   PATHWAY: sste00020
Entry
sste00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mammaliicoccus stepanovicii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sste00020  Citrate cycle (TCA cycle)
sste00020

Module
sste_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sste00020]
sste_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sste00020]
sste_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sste00020]
sste_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sste00020]
sste_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sste00020]
Other DBs
GO: 0006099
Organism
Mammaliicoccus stepanovicii [GN:sste]
Gene
SAMEA4384403_1057  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SAMEA4384403_1438  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SAMEA4384403_1058  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SAMEA4384403_1363  sucA; 2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
SAMEA4384403_1364  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SAMEA4384403_1262  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMEA4384403_1728  pdhD; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
SAMEA4384403_1510  porA; pyruvate flavodoxin ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAMEA4384403_1509  porB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAMEA4384403_1563  sucD; Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
SAMEA4384403_1564  sucC; Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
SAMEA4384403_1675  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAMEA4384403_1674  sdhB_2; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SAMEA4384403_1676  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
SAMEA4384403_0890  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SAMEA4384403_1059  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SAMEA4384403_1415  mqo1; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAMEA4384403_0201  mqo2; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAMEA4384403_1710  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAMEA4384403_0937  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SAMEA4384403_1731  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SAMEA4384403_1730  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SAMEA4384403_1729  pdhC_2; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sste00010  Glycolysis / Gluconeogenesis
sste00053  Ascorbate and aldarate metabolism
sste00061  Fatty acid biosynthesis
sste00071  Fatty acid degradation
sste00190  Oxidative phosphorylation
sste00220  Arginine biosynthesis
sste00250  Alanine, aspartate and glutamate metabolism
sste00280  Valine, leucine and isoleucine degradation
sste00350  Tyrosine metabolism
sste00470  D-Amino acid metabolism
sste00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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