KEGG   PATHWAY: sstn00020
Entry
sstn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Solanum stenotomum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sstn00020  Citrate cycle (TCA cycle)
sstn00020

Module
sstn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sstn00020]
sstn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sstn00020]
sstn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sstn00020]
Other DBs
GO: 0006099
Organism
Solanum stenotomum [GN:sstn]
Gene
125876594  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
125878489  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
125868043  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
125864839  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
125867954  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
125857072  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
125842255  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
125862019  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
125876851  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125861229  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125847554  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
125871596  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
125844764  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
125849218  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
125878317  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
125866107  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125846799  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125866567  uncharacterized protein LOC125866567 [KO:K00164] [EC:1.2.4.2]
125854626  uncharacterized protein LOC125854626 [KO:K00164] [EC:1.2.4.2]
125876093  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125862266  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125863255  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125851148  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125866627  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
125869160  dihydrolipoyl dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
125875152  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125846723  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125872805  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125846663  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
125855236  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
125855252  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
125846986  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
125870842  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
125871537  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
125845142  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
125876908  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
125852011  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125853573  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125869035  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
125870677  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125857623  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
125862854  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
125857027  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
125876246  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
125867847  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
125856427  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
125861957  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
125878341  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
125854824  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like isoform X1 [KO:K00162] [EC:1.2.4.1]
125868695  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
125858626  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
125874018  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
125876350  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125850054  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125866885  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
125845418  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
125845582  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sstn00010  Glycolysis / Gluconeogenesis
sstn00053  Ascorbate and aldarate metabolism
sstn00061  Fatty acid biosynthesis
sstn00062  Fatty acid elongation
sstn00071  Fatty acid degradation
sstn00190  Oxidative phosphorylation
sstn00220  Arginine biosynthesis
sstn00250  Alanine, aspartate and glutamate metabolism
sstn00280  Valine, leucine and isoleucine degradation
sstn00350  Tyrosine metabolism
sstn00470  D-Amino acid metabolism
sstn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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