KEGG   PATHWAY: stae00020
Entry
stae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Spirosoma taeanense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stae00020  Citrate cycle (TCA cycle)
stae00020

Module
stae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stae00020]
stae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stae00020]
stae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stae00020]
stae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stae00020]
stae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stae00020]
Other DBs
GO: 0006099
Organism
Spirosoma taeanense [GN:stae]
Gene
HNV11_19430  citrate synthase [KO:K01647] [EC:2.3.3.1]
HNV11_12970  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HNV11_18480  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HNV11_03765  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HNV11_03770  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HNV11_10120  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
HNV11_21285  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNV11_03360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNV11_05625  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HNV11_10040  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HNV11_20790  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HNV11_20785  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HNV11_20795  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HNV11_10350  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HNV11_02890  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HNV11_10570  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HNV11_19990  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HNV11_14965  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HNV11_23180  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HNV11_23570  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HNV11_09275  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stae00010  Glycolysis / Gluconeogenesis
stae00053  Ascorbate and aldarate metabolism
stae00061  Fatty acid biosynthesis
stae00071  Fatty acid degradation
stae00190  Oxidative phosphorylation
stae00220  Arginine biosynthesis
stae00250  Alanine, aspartate and glutamate metabolism
stae00280  Valine, leucine and isoleucine degradation
stae00350  Tyrosine metabolism
stae00470  D-Amino acid metabolism
stae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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