KEGG   PATHWAY: stap00020
Entry
stap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus sp. AntiMn-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stap00020  Citrate cycle (TCA cycle)
stap00020

Module
stap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stap00020]
stap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stap00020]
stap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stap00020]
stap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stap00020]
stap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stap00020]
Other DBs
GO: 0006099
Organism
Staphylococcus sp. AntiMn-1 [GN:stap]
Gene
AOB58_253  citrate synthase [KO:K01647] [EC:2.3.3.1]
AOB58_589  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AOB58_254  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOB58_510  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AOB58_511  dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
AOB58_424  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOB58_903  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOB58_652  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOB58_651  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOB58_698  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOB58_699  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOB58_859  succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AOB58_858  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AOB58_860  succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
AOB58_125  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AOB58_1236  L-lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOB58_1982  dehydrogenase [KO:K00116] [EC:1.1.5.4]
AOB58_2382  dehydrogenase [KO:K00116] [EC:1.1.5.4]
AOB58_887  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AOB58_161  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AOB58_906  hypothetical protein [KO:K00161] [EC:1.2.4.1]
AOB58_905  hypothetical protein [KO:K00162] [EC:1.2.4.1]
AOB58_904  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stap00010  Glycolysis / Gluconeogenesis
stap00053  Ascorbate and aldarate metabolism
stap00061  Fatty acid biosynthesis
stap00071  Fatty acid degradation
stap00190  Oxidative phosphorylation
stap00220  Arginine biosynthesis
stap00250  Alanine, aspartate and glutamate metabolism
stap00280  Valine, leucine and isoleucine degradation
stap00350  Tyrosine metabolism
stap00470  D-Amino acid metabolism
stap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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