KEGG   PATHWAY: step00020
Entry
step00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfuracidifex tepidarius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
step00020  Citrate cycle (TCA cycle)
step00020

Module
step_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:step00020]
step_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:step00020]
step_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:step00020]
Other DBs
GO: 0006099
Organism
Sulfuracidifex tepidarius [GN:step]
Gene
IC006_2266  Citrate synthase [KO:K01647] [EC:2.3.3.1]
IC006_1604  Citrate synthase [KO:K01659] [EC:2.3.3.5]
IC006_0809  Methanogen homoaconitase large subunit [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IC006_2831  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IC006_2104  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC006_1342  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC006_0783  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC006_2814  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC006_2010  2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IC006_2009  2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IC006_2628  Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
IC006_2627  hypothetical protein [KO:K01903] [EC:6.2.1.5]
IC006_2741  Fumarate reductase (CoM/CoB) subunit A [KO:K00239] [EC:1.3.5.1]
IC006_2742  Fumarate reductase (CoM/CoB) subunit B [KO:K00240] [EC:1.3.5.1]
IC006_2743  CoB--CoM heterodisulfide reductase subunit B [KO:K00241]
IC006_2744  hypothetical protein [KO:K18859]
IC006_0228  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
IC006_2262  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
step00010  Glycolysis / Gluconeogenesis
step00061  Fatty acid biosynthesis
step00071  Fatty acid degradation
step00190  Oxidative phosphorylation
step00220  Arginine biosynthesis
step00250  Alanine, aspartate and glutamate metabolism
step00280  Valine, leucine and isoleucine degradation
step00350  Tyrosine metabolism
step00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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