KEGG   PATHWAY: sthr00020
Entry
sthr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfobacillus thermotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sthr00020  Citrate cycle (TCA cycle)
sthr00020

Module
sthr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sthr00020]
sthr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sthr00020]
Other DBs
GO: 0006099
Organism
Sulfobacillus thermotolerans [GN:sthr]
Gene
BXT84_06190  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BXT84_11310  citrate synthase [KO:K01647] [EC:2.3.3.1]
BXT84_12440  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BXT84_09895  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BXT84_08405  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BXT84_08400  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BXT84_13485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXT84_00975  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXT84_01035  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXT84_01885  hypothetical protein [KO:K00382] [EC:1.8.1.4]
BXT84_14445  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BXT84_14450  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BXT84_09910  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BXT84_09905  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BXT84_05565  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BXT84_05570  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BXT84_12860  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BXT84_09900  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BXT84_13685  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BXT84_12385  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BXT84_12390  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BXT84_13690  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BXT84_13695  hypothetical protein [KO:K00627] [EC:2.3.1.12]
BXT84_12395  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sthr00010  Glycolysis / Gluconeogenesis
sthr00053  Ascorbate and aldarate metabolism
sthr00061  Fatty acid biosynthesis
sthr00071  Fatty acid degradation
sthr00190  Oxidative phosphorylation
sthr00220  Arginine biosynthesis
sthr00250  Alanine, aspartate and glutamate metabolism
sthr00280  Valine, leucine and isoleucine degradation
sthr00350  Tyrosine metabolism
sthr00470  D-Amino acid metabolism
sthr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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