KEGG   PATHWAY: strd00020
Entry
strd00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. CCM_MD2014
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
strd00020  Citrate cycle (TCA cycle)
strd00020

Module
strd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:strd00020]
strd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:strd00020]
strd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:strd00020]
strd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:strd00020]
strd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:strd00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. CCM_MD2014 [GN:strd]
Gene
NI25_22200  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NI25_10035  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
NI25_10040  citrate synthase [KO:K01647] [EC:2.3.3.1]
NI25_25265  citrate synthase [KO:K01647] [EC:2.3.3.1]
NI25_09355  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NI25_04180  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NI25_12770  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NI25_28270  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NI25_15990  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NI25_15995  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NI25_05470  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NI25_14885  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NI25_05475  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NI25_14890  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NI25_14670  fumarate reductase [KO:K00239] [EC:1.3.5.1]
NI25_13630  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
NI25_03205  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
NI25_14675  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
NI25_13635  fumarate reductase [KO:K00240] [EC:1.3.5.1]
NI25_03200  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
NI25_14660  succinate dehydrogenase [KO:K00241]
NI25_03210  succinate dehydrogenase [KO:K00241]
NI25_14665  succinate dehydrogenase [KO:K00242]
NI25_13795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NI25_13805  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
NI25_14820  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NI25_01285  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NI25_14025  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
NI25_28255  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
NI25_27210  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
NI25_28265  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
strd00010  Glycolysis / Gluconeogenesis
strd00053  Ascorbate and aldarate metabolism
strd00061  Fatty acid biosynthesis
strd00071  Fatty acid degradation
strd00190  Oxidative phosphorylation
strd00220  Arginine biosynthesis
strd00250  Alanine, aspartate and glutamate metabolism
strd00280  Valine, leucine and isoleucine degradation
strd00350  Tyrosine metabolism
strd00470  D-Amino acid metabolism
strd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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