KEGG   PATHWAY: stry00020
Entry
stry00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. S6
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stry00020  Citrate cycle (TCA cycle)
stry00020

Module
stry_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stry00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. S6 [GN:stry]
Gene
EQG64_10430  citrate synthase [KO:K01647] [EC:2.3.3.1]
EQG64_20390  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
EQG64_31805  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
EQG64_28490  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EQG64_29965  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EQG64_21170  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EQG64_21165  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EQG64_22140  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EQG64_22295  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EQG64_32435  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EQG64_22290  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EQG64_32440  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EQG64_22305  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EQG64_32430  succinate dehydrogenase [KO:K00241]
EQG64_22300  succinate dehydrogenase [KO:K00242]
EQG64_23355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EQG64_22195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EQG64_23015  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EQG64_07680  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EQG64_08720  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stry00010  Glycolysis / Gluconeogenesis
stry00053  Ascorbate and aldarate metabolism
stry00061  Fatty acid biosynthesis
stry00071  Fatty acid degradation
stry00190  Oxidative phosphorylation
stry00220  Arginine biosynthesis
stry00250  Alanine, aspartate and glutamate metabolism
stry00280  Valine, leucine and isoleucine degradation
stry00350  Tyrosine metabolism
stry00470  D-Amino acid metabolism
stry00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system