KEGG   PATHWAY: sual00020
Entry
sual00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfitobacter albidus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sual00020  Citrate cycle (TCA cycle)
sual00020

Module
sual_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sual00020]
sual_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sual00020]
Other DBs
GO: 0006099
Organism
Sulfitobacter albidus [GN:sual]
Gene
KDD17_07925  citrate synthase [KO:K01647] [EC:2.3.3.1]
KDD17_05830  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KDD17_07385  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KDD17_07390  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KDD17_02085  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KDD17_02080  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KDD17_05380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDD17_02120  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KDD17_02200  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KDD17_02175  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KDD17_02180  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KDD17_07085  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KDD17_02160  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KDD17_08825  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KDD17_12385  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KDD17_05310  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KDD17_05305  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KDD17_05300  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sual00010  Glycolysis / Gluconeogenesis
sual00053  Ascorbate and aldarate metabolism
sual00061  Fatty acid biosynthesis
sual00071  Fatty acid degradation
sual00190  Oxidative phosphorylation
sual00220  Arginine biosynthesis
sual00250  Alanine, aspartate and glutamate metabolism
sual00280  Valine, leucine and isoleucine degradation
sual00350  Tyrosine metabolism
sual00470  D-Amino acid metabolism
sual00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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