KEGG   PATHWAY: sury00020
Entry
sury00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus ureilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sury00020  Citrate cycle (TCA cycle)
sury00020

Module
sury_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sury00020]
sury_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sury00020]
sury_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sury00020]
sury_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sury00020]
sury_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sury00020]
Other DBs
GO: 0006099
Organism
Staphylococcus ureilyticus [GN:sury]
Gene
MUA21_07165  citrate synthase [KO:K01647] [EC:2.3.3.1]
MUA21_05495  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MUA21_07160  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUA21_05870  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MUA21_05865  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MUA21_03985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUA21_06320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUA21_04870  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MUA21_04875  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MUA21_04655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUA21_04650  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUA21_04215  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUA21_04220  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUA21_04210  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MUA21_07845  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUA21_02130  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUA21_10035  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MUA21_00655  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MUA21_04075  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MUA21_07645  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MUA21_03970  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MUA21_03975  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MUA21_03980  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sury00010  Glycolysis / Gluconeogenesis
sury00053  Ascorbate and aldarate metabolism
sury00061  Fatty acid biosynthesis
sury00071  Fatty acid degradation
sury00190  Oxidative phosphorylation
sury00220  Arginine biosynthesis
sury00250  Alanine, aspartate and glutamate metabolism
sury00280  Valine, leucine and isoleucine degradation
sury00350  Tyrosine metabolism
sury00470  D-Amino acid metabolism
sury00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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