KEGG   PATHWAY: sva00020
Entry
sva00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurifustis variabilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sva00020  Citrate cycle (TCA cycle)
sva00020

Module
sva_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sva00020]
sva_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sva00020]
sva_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sva00020]
sva_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sva00020]
Other DBs
GO: 0006099
Organism
Sulfurifustis variabilis [GN:sva]
Gene
SVA_2367  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SVA_3378  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SVA_2546  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SVA_2255  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SVA_0032  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SVA_0033  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SVA_0034  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SVA_2879  pyruvate dehydrogenase [KO:K00382] [EC:1.8.1.4]
SVA_2239  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SVA_2240  malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SVA_1657  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SVA_1658  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SVA_1655  succinate dehydrogenase [KO:K00241]
SVA_1656  succinate dehydrogenase [KO:K00242]
SVA_1859  fumarate reductase [KO:K00244] [EC:1.3.5.1]
SVA_1850  fumarate reductase [KO:K00245] [EC:1.3.5.1]
SVA_1851  succinate dehydrogenase [KO:K00246]
SVA_1852  succinate dehydrogenase [KO:K00247]
SVA_1857  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SVA_2493  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
SVA_3852  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SVA_1884  acetyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
SVA_1885  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
SVA_1020  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SVA_2881  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
SVA_2880  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
SVA_3226  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
SVA_0233  thiamine pyrophosphate-binding protein [KO:K00170] [EC:1.2.7.1]
SVA_3225  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
SVA_3227  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
SVA_0234  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sva00010  Glycolysis / Gluconeogenesis
sva00053  Ascorbate and aldarate metabolism
sva00061  Fatty acid biosynthesis
sva00071  Fatty acid degradation
sva00190  Oxidative phosphorylation
sva00220  Arginine biosynthesis
sva00250  Alanine, aspartate and glutamate metabolism
sva00280  Valine, leucine and isoleucine degradation
sva00350  Tyrosine metabolism
sva00470  D-Amino acid metabolism
sva00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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