KEGG   PATHWAY: svi00020
Entry
svi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharomonospora viridis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
svi00020  Citrate cycle (TCA cycle)
svi00020

Module
svi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:svi00020]
svi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:svi00020]
svi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:svi00020]
svi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:svi00020]
svi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:svi00020]
Other DBs
GO: 0006099
Organism
Saccharomonospora viridis [GN:svi]
Gene
Svir_33820  citrate synthase [KO:K01647] [EC:2.3.3.1]
Svir_33600  citrate synthase [KO:K01647] [EC:2.3.3.1]
Svir_23930  aconitase [KO:K01681] [EC:4.2.1.3]
Svir_22420  aconitase [KO:K01681] [EC:4.2.1.3]
Svir_05050  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Svir_14420  isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Svir_30580  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Svir_10500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Svir_11020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Svir_03330  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Svir_03320  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Svir_04930  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Svir_04920  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Svir_05360  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Svir_27750  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Svir_05350  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Svir_27740  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Svir_05380  succinate dehydrogenase subunit C [KO:K00241]
Svir_05370  succinate dehydrogenase subunit D [KO:K00242]
Svir_24490  fumarase [KO:K01676] [EC:4.2.1.2]
Svir_31540  fumarase [KO:K01679] [EC:4.2.1.2]
Svir_19950  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Svir_09250  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Svir_39080  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Svir_10310  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Svir_14180  pyruvate dehydrogenase complex, dehydrogenase (E1) component [KO:K00163] [EC:1.2.4.1]
Svir_10490  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
svi00010  Glycolysis / Gluconeogenesis
svi00053  Ascorbate and aldarate metabolism
svi00061  Fatty acid biosynthesis
svi00071  Fatty acid degradation
svi00190  Oxidative phosphorylation
svi00220  Arginine biosynthesis
svi00250  Alanine, aspartate and glutamate metabolism
svi00280  Valine, leucine and isoleucine degradation
svi00350  Tyrosine metabolism
svi00470  D-Amino acid metabolism
svi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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