KEGG   PATHWAY: svn00020
Entry
svn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces vinaceus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
svn00020  Citrate cycle (TCA cycle)
svn00020

Module
svn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:svn00020]
svn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:svn00020]
svn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:svn00020]
svn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:svn00020]
svn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:svn00020]
Other DBs
GO: 0006099
Organism
Streptomyces vinaceus [GN:svn]
Gene
CP980_08425  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CP980_08430  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
CP980_19025  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CP980_21715  citrate synthase [KO:K01647] [EC:2.3.3.1]
CP980_07775  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CP980_05660  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CP980_11210  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CP980_23935  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CP980_14210  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CP980_14215  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CP980_13340  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CP980_13345  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CP980_05165  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP980_12125  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP980_13160  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CP980_05160  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP980_12130  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP980_13165  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CP980_05170  succinate dehydrogenase [KO:K00241]
CP980_13150  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CP980_13155  succinate dehydrogenase [KO:K00242]
CP980_12325  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CP980_12340  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CP980_13285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CP980_12655  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CP980_23055  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP980_23915  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CP980_23930  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
svn00010  Glycolysis / Gluconeogenesis
svn00053  Ascorbate and aldarate metabolism
svn00061  Fatty acid biosynthesis
svn00071  Fatty acid degradation
svn00190  Oxidative phosphorylation
svn00220  Arginine biosynthesis
svn00250  Alanine, aspartate and glutamate metabolism
svn00280  Valine, leucine and isoleucine degradation
svn00350  Tyrosine metabolism
svn00470  D-Amino acid metabolism
svn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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