KEGG   PATHWAY: sxl00020
Entry
sxl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus xylosus SMQ-121
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sxl00020  Citrate cycle (TCA cycle)
sxl00020

Module
sxl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sxl00020]
sxl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sxl00020]
sxl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sxl00020]
sxl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sxl00020]
sxl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sxl00020]
Other DBs
GO: 0006099
Organism
Staphylococcus xylosus SMQ-121 [GN:sxl]
Gene
SXYLSMQ121_1109  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
SXYLSMQ121_1449  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SXYLSMQ121_1110  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SXYLSMQ121_1363  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SXYLSMQ121_1364  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SXYLSMQ121_1274  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
SXYLSMQ121_1696  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
SXYLSMQ121_1515  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SXYLSMQ121_1514  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SXYLSMQ121_1558  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
SXYLSMQ121_1559  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
SXYLSMQ121_1651  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SXYLSMQ121_1650  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SXYLSMQ121_1652  Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
SXYLSMQ121_0977  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SXYLSMQ121_2005  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SXYLSMQ121_0175  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SXYLSMQ121_0574  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SXYLSMQ121_1678  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
SXYLSMQ121_1019  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SXYLSMQ121_1699  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
SXYLSMQ121_1698  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
SXYLSMQ121_1697  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sxl00010  Glycolysis / Gluconeogenesis
sxl00053  Ascorbate and aldarate metabolism
sxl00061  Fatty acid biosynthesis
sxl00071  Fatty acid degradation
sxl00190  Oxidative phosphorylation
sxl00220  Arginine biosynthesis
sxl00250  Alanine, aspartate and glutamate metabolism
sxl00280  Valine, leucine and isoleucine degradation
sxl00350  Tyrosine metabolism
sxl00470  D-Amino acid metabolism
sxl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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