KEGG   PATHWAY: syb03430
Entry
syb03430                    Pathway                                
Name
Mismatch repair - Sphingobium sp. YBL2
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
syb03430  Mismatch repair
syb03430

Other DBs
GO: 0006298
Organism
Sphingobium sp. YBL2 [GN:syb]
Gene
TZ53_04425  DNA mismatch repair protein MutS [KO:K03555]
TZ53_19470  DNA mismatch repair protein MutL [KO:K03572]
TZ53_17365  DNA helicase II [KO:K03657] [EC:5.6.2.4]
TZ53_03875  hypothetical protein [KO:K03657] [EC:5.6.2.4]
TZ53_03545  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
TZ53_03085  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
TZ53_02865  recombinase RecJ [KO:K07462] [EC:3.1.-.-]
TZ53_10330  single-stranded DNA-binding protein [KO:K03111]
TZ53_23155  hypothetical protein [KO:K03111]
TZ53_23715  single-stranded DNA-binding protein [KO:K03111]
TZ53_22765  single-stranded DNA-binding protein [KO:K03111]
TZ53_22880  single-stranded DNA-binding protein [KO:K03111]
TZ53_19210  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
TZ53_02700  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
TZ53_17245  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
TZ53_04675  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
TZ53_18795  DNA polymerase [KO:K02341] [EC:2.7.7.7]
TZ53_00595  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
TZ53_04535  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
TZ53_14380  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
TZ53_15985  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
TZ53_22390  DNA methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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