KEGG   PATHWAY: synp00020
Entry
synp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Synechococcus sp. PCC 7502
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
synp00020  Citrate cycle (TCA cycle)
synp00020

Module
synp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:synp00020]
synp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:synp00020]
Other DBs
GO: 0006099
Organism
Synechococcus sp. PCC 7502 [GN:synp]
Gene
Syn7502_03040  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Syn7502_02014  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Syn7502_00041  isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Syn7502_01065  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Syn7502_02107  ubiquinone-dependent succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Syn7502_02951  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Syn7502_00059  heterodisulfide reductase, subunit B [KO:K00241]
Syn7502_01426  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
Syn7502_00257  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Syn7502_02584  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Syn7502_00271  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Syn7502_00631  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
synp00010  Glycolysis / Gluconeogenesis
synp00053  Ascorbate and aldarate metabolism
synp00061  Fatty acid biosynthesis
synp00071  Fatty acid degradation
synp00190  Oxidative phosphorylation
synp00220  Arginine biosynthesis
synp00250  Alanine, aspartate and glutamate metabolism
synp00280  Valine, leucine and isoleucine degradation
synp00350  Tyrosine metabolism
synp00470  D-Amino acid metabolism
synp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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