KEGG   PATHWAY: syo00630
Entry
syo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Synechocystis sp. IPPAS B-1465
Class
Metabolism; Carbohydrate metabolism
Pathway map
syo00630  Glyoxylate and dicarboxylate metabolism
syo00630

Module
syo_M00621  Glycine cleavage system [PATH:syo00630]
Other DBs
GO: 0046487 0043648
Organism
Synechocystis sp. IPPAS B-1465 [GN:syo]
Gene
C7I86_13275  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
C7I86_13125  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7I86_12015  citrate synthase [KO:K01659] [EC:2.3.3.5]
C7I86_15625  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7I86_06765  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7I86_06770  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
C7I86_11980  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
C7I86_01460  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
C7I86_02945  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
C7I86_02505  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C7I86_16325  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C7I86_05130  carotenoid oxygenase [KO:K01091] [EC:3.1.3.18]
C7I86_11625  rbcL; ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
C7I86_11635  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
C7I86_15650  glutamate synthase [KO:K00284] [EC:1.4.7.1]
C7I86_02300  glutamate synthase [KO:K00284] [EC:1.4.7.1]
C7I86_10110  glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
C7I86_02480  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C7I86_02825  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C7I86_10140  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
C7I86_10940  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
C7I86_00925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7I86_05315  gcvH; glycine cleavage system protein H [KO:K02437]
C7I86_04495  glycerate kinase [KO:K00865] [EC:2.7.1.165]
C7I86_13965  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C7I86_05035  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
C7I86_07685  cyclase family protein [KO:K07130] [EC:3.5.1.9]
C7I86_12055  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
syo00010  Glycolysis / Gluconeogenesis
syo00020  Citrate cycle (TCA cycle)
syo00030  Pentose phosphate pathway
syo00053  Ascorbate and aldarate metabolism
syo00071  Fatty acid degradation
syo00230  Purine metabolism
syo00250  Alanine, aspartate and glutamate metabolism
syo00260  Glycine, serine and threonine metabolism
syo00620  Pyruvate metabolism
syo00710  Carbon fixation by Calvin cycle
syo00750  Vitamin B6 metabolism
syo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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